Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4892
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0381 + 7951360-7951509,7952125-7952169,7952625-7952744,795...    29   5.2  

>03_02_0381 +
           7951360-7951509,7952125-7952169,7952625-7952744,
           7952823-7952930,7953256-7953363,7953635-7953808,
           7954054-7954191,7954643-7954750,7954866-7954973,
           7955086-7955234,7955816-7955969,7956143-7956303,
           7956391-7956597,7956703-7956886,7956974-7957057,
           7957146-7957345,7957476-7957535,7957631-7957835
          Length = 820

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 500 LSTVPYRII*REIVLRQSSPRSHRGIEYVLIMSSD 396
           L +VP+ +I +   L+    R H+G +Y ++ S+D
Sbjct: 646 LVSVPWMLIPKPFFLKMEHERRHQGQQYAMLQSTD 680


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,927,843
Number of Sequences: 37544
Number of extensions: 325164
Number of successful extensions: 589
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)