Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4891
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    34   0.025
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.2  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    28   1.6  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    27   2.2  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    27   2.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.9  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    27   3.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.8  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   5.0  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   6.6  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   8.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 33.9 bits (74), Expect = 0.025
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
 Frame = +3

Query: 459  SRPRSRAIPSRKEGALSRTRTS*QALPRQGARAPA--LPSREARPLPRQGSSAPTLPRGE 632
            S P S+ + +     L+R       +P+  ++AP   LPS +A P+P   ++ P      
Sbjct: 993  SAPLSKPVSTSPAAPLARV----PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTS 1048

Query: 633  TRAIPRRS*GARTAALPRCEARSGSPSRCPSTGPTP 740
            T  +P+ S GA +A  P     S  PS    +G  P
Sbjct: 1049 TPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPP 1084


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +3

Query: 456 GSRPR--SRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPTL 620
           GS PR  S A+ ++     S ++ S  + P Q  + PALPSR    LP +  S P++
Sbjct: 77  GSTPRTASPAVGNQDYSKPSYSQPS-YSQPSQPPKEPALPSRGTPSLPSRPGSRPSV 132


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 287 TSPRPSPSSKASLYLTPSTDP 349
           TSP+PSPS   S+  TP  +P
Sbjct: 469 TSPQPSPSLSTSIMSTPKLNP 489


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 549 ARAPALPSREARPLPRQGSSAPTLPRGETRAIP 647
           A + A+P  EA+P P   S+A   P  E+  +P
Sbjct: 316 ATSDAVPPAEAKPEPVPASAAERAPTSESTTVP 348


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +3

Query: 465 PRSR-AIPSRKEGALSRTRTS*QALPRQGARAPALPSR-EARPLPR--QGSSAP 614
           PR R A P  +  A +R+ ++  ALP +    P  PSR +  P P   QG S+P
Sbjct: 2   PRRRSAAPPPRRAAPARSASTAAALPPRTMAPPPAPSRVQQAPPPTAVQGGSSP 55


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 379  YPVKVAVPQPYEVVKHVPYHVKEYVKV 459
            Y +K+ VP P+  ++H P HV  Y ++
Sbjct: 2322 YSLKLDVPLPFFALEHRPTHVISYTEL 2348


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 112 QLCFLSSSSHWQPLLLPAGKLSRA 41
           ++  L     WQP+L+P GK+ RA
Sbjct: 223 EMAHLLKDPIWQPILMPNGKVLRA 246


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 465 PRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPT 617
           PRS     R+   LS +R    A+    A  PA+P R A  LP  G+++ T
Sbjct: 366 PRSAPSTGRQPPPLSSSR----AVSNPPAPPPAIPGRSAPALPPLGNASRT 412



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 26/97 (26%), Positives = 40/97 (41%)
 Frame = +3

Query: 357 PS*EARALSRQGSRAPTLRGRQTRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QAL 536
           P   +RA+S   +  P + GR   A+   G    SR  +  +P+      S   ++  +L
Sbjct: 378 PLSSSRAVSNPPAPPPAIPGRSAPALPPLGN--ASRTSTPPVPTPP----SLPPSAPPSL 431

Query: 537 PRQGARAPALPSREARPLPRQGSSAPTLPRGETRAIP 647
           P     +  + +  A PLP     AP LP G   A P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 349 VPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVK 456
           + YPV +  P  V   V Q YEV   V YH K+ +K
Sbjct: 304 ITYPVAETAPSLVVKVVNQDYEV--KVFYHYKDNIK 337


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 435 SREGVR*GSRPRSRAIPSRKEGALSRTRT-S*QALPRQGARAPALPSREARPLPRQGSSA 611
           S + +R GS  RSR+ PS + G   R+ + S  ++P     A  +P       PR+    
Sbjct: 335 SSQSLRLGSLHRSRS-PSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTPDGFPRRFERD 393

Query: 612 PTLPRGETRAIPR 650
           PT+P    +   R
Sbjct: 394 PTIPPDSIKVYSR 406


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
 Frame = +1

Query: 322 PVPYAVDRPVP----YPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVP 462
           P PY    PV      P++ H PYP     P         PY+  +    P
Sbjct: 190 PPPYCFQSPVSPGATVPLQHHSPYPSDNGFPGHRRQTHFAPYYYPQRATSP 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,335
Number of Sequences: 5004
Number of extensions: 54588
Number of successful extensions: 219
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)