Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4890
(542 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 275 3e-75
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 145 3e-36
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 133 2e-32
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 107 8e-25
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 87 2e-18
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 81 1e-16
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 77 2e-15
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 34 0.012
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 33 0.021
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.083
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 28 0.77
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc... 28 1.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 1.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.8
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.1
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 4.1
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 4.1
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 5.5
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 25 7.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 275 bits (674), Expect = 3e-75
Identities = 123/135 (91%), Positives = 129/135 (95%)
Frame = +3
Query: 72 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVXDEAQSK 251
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYV DEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 252 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 431
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 432 IMFETFNTPAMYVAI 476
I+FETFN PA YVAI
Sbjct: 122 IIFETFNAPAFYVAI 136
Score = 42.3 bits (95), Expect = 4e-05
Identities = 20/21 (95%), Positives = 20/21 (95%)
Frame = +1
Query: 478 QAVLSLYASGRTTGIVLDFGD 540
QAVLSLYASGRTTGIVLD GD
Sbjct: 137 QAVLSLYASGRTTGIVLDSGD 157
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 145 bits (352), Expect = 3e-36
Identities = 68/142 (47%), Positives = 95/142 (66%), Gaps = 2/142 (1%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVXDEAQSKRGILTL 269
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +V EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 270 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 446
+ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 447 FNTPAMYVAI-PSRALAVRVRS 509
N PA+ ++ P AL R+
Sbjct: 132 LNVPALSFSLQPVLALYASART 153
Score = 36.3 bits (80), Expect = 0.003
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +1
Query: 457 PPCTSPFQAVLSLYASGRTTGIVLDFGD 540
P + Q VL+LYAS RTTGIVL+ GD
Sbjct: 135 PALSFSLQPVLALYASARTTGIVLECGD 162
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 133 bits (321), Expect = 2e-32
Identities = 62/135 (45%), Positives = 92/135 (68%), Gaps = 2/135 (1%)
Frame = +3
Query: 78 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVXDEAQSK 251
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD V DEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 252 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 431
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 432 IMFETFNTPAMYVAI 476
MFE + +YVAI
Sbjct: 122 TMFERYGFGGVYVAI 136
Score = 33.1 bits (72), Expect = 0.027
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +1
Query: 478 QAVLSLYASGRTTGIVLDFGD 540
QAVLSLYA G ++G+V+D GD
Sbjct: 137 QAVLSLYAQGLSSGVVVDSGD 157
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 107 bits (258), Expect = 8e-25
Identities = 59/153 (38%), Positives = 82/153 (53%), Gaps = 24/153 (15%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVXDEAQ----SK 251
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ + SK
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 252 RGI------------------LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 377
R +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 378 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAI 476
LLTE PLNP NRE +IMFE+FN +Y+A+
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAV 159
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 87.0 bits (206), Expect = 2e-18
Identities = 48/133 (36%), Positives = 72/133 (54%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVXDEAQSKR 254
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYIY---KSNP 61
Query: 255 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 434
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 435 MFETFNTPAMYVA 473
MFE+ PA Y+A
Sbjct: 121 MFESLRCPATYLA 133
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 81.0 bits (191), Expect = 1e-16
Identities = 42/130 (32%), Positives = 75/130 (57%), Gaps = 1/130 (0%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVXDEAQSKRGILTL 269
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + V ++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 270 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 446
+ P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 447 FNTPAMYVAI 476
+N P++ I
Sbjct: 142 YNAPSVAYGI 151
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 77.0 bits (181), Expect = 2e-15
Identities = 40/134 (29%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Frame = +3
Query: 75 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVXDEAQSKR 254
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 255 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 428
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 429 QIMFETFNTPAMYV 470
+ FE + PA Y+
Sbjct: 122 EAAFEQLHVPAFYL 135
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 34.3 bits (75), Expect = 0.012
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = +3
Query: 276 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 443
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 444 TFNTPAMYVA 473
P +A
Sbjct: 172 ECQVPGFTIA 181
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 457 PPCTSPFQAVLSLYASGRTTGIVLDFG 537
P T ++ ++ LYA G G+V+D G
Sbjct: 176 PGFTIAYEPLMGLYAIGILHGLVIDIG 202
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 33.5 bits (73), Expect = 0.021
Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 2/136 (1%)
Frame = +3
Query: 90 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVXDEAQSKRGILTL 269
+V+DNG+ KAGFAG P+ + R + G + +G + + D L
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSK-DGNRLFLGNELANCNDFT-----TLQF 59
Query: 270 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFE 443
+ E G + +W +W N + P ++ +LLT+ + Q++FE
Sbjct: 60 RRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLVFE 119
Query: 444 TFNTPAMYVAIPSRAL 491
F A P+ +
Sbjct: 120 EFQFDAYLPCTPAELI 135
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.5 bits (68), Expect = 0.083
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 336 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTP 458
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 28.3 bits (60), Expect = 0.77
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 135 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVXDEAQSKRGILTLKYP 278
G+ PRA F ++ P H G+++ M KD +E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 27.9 bits (59), Expect = 1.0
Identities = 20/89 (22%), Positives = 41/89 (46%)
Frame = +3
Query: 258 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 437
+L K + I ++D+ K + +E V + LL E LN +ANR MT+ +
Sbjct: 188 LLNHKSQVAEFISYHFDEFFKQYTVLLKSENYVTKRQSLKLLGEILLN-RANRSVMTRYI 246
Query: 438 FETFNTPAMYVAIPSRALAVRVRSYHRYR 524
N M + + ++ ++ ++H ++
Sbjct: 247 SSAENLKLMMILLRDKSKNIQFEAFHVFK 275
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 1.8
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 235 SXT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 119
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 1.8
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = -2
Query: 229 T*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 71
T S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 378 LLTEAPLNPKANREKMTQIMFETFN 452
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 117 TYRSHCLLPTRQLLRRTS*ISEI 49
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 272 FEGQDTSFALCLISYIRVLLSHTDHHA 192
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3
Query: 243 VPHLXHKSPSVPYRPSRPDGGAFPRSRET 157
+ L K+PS PY SRP A S T
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPT 334
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 425 DPDHVRNIQHARHVRRHSKPCSRCTRP 505
DPDH++N R R HS + RP
Sbjct: 158 DPDHMQNFVSVRLHRSHSTDSNSKKRP 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,195
Number of Sequences: 5004
Number of extensions: 51737
Number of successful extensions: 163
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -