Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4890
         (542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.0  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    23   2.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.1  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   6.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 348  LRVAPEEHPVLLTEAPLNPKANREKM 425
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 481 LGMATYMAGVLNVSNMIWVIFSLLALGLRGAS 386
           +G+   M   LN+SN+ W+        L GA+
Sbjct: 22  IGLHNNMCTSLNLSNLFWLFVGTYFPSLIGAN 53


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 457 PPCTSPFQAVLSLYASGRTT 516
           PP  SPF A   L+   RTT
Sbjct: 610 PPKISPFTADRDLHLGERTT 629


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 111 GMCKAGFAGD 140
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,537
Number of Sequences: 438
Number of extensions: 3873
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)