Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4889
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    28   1.2  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    27   2.1  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    26   4.9  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    26   6.4  
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar...    25   8.5  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    25   8.5  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   8.5  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   8.5  
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c...    25   8.5  

>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 393 FPFFVLTQTLRASGKQKIANPDYPSKDNGSNCLKY 497
           F  F L  T  A    K+   D+  +D+G  CL+Y
Sbjct: 13  FLAFTLKSTSNAEKHDKVDYKDFVRRDDGDTCLRY 47


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 291 NFFF--FSIAPSLVRLRLSLSTASLHRFRSV 205
           NF F   SI P L  L  S+S ++LH FRS+
Sbjct: 318 NFLFALLSIIPILFALFYSISGSTLHSFRSI 348


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 324 IEIKQLEKFKCNFFFFSIAP-SLVRLRLSL-STASLHRFRSVVWCSAALSSP 175
           + +KQ    KC++F+ +I     VR RL L S+ +L    +V+ C+     P
Sbjct: 635 LNVKQFASTKCDYFYMNIQNIGTVRFRLYLDSSKALTDRLNVLLCNYIADKP 686


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 731 RPGSVV*IGRGLSPAVDDCG 672
           RPGS + + R L P +D CG
Sbjct: 876 RPGSPLYLVRALIPVIDSCG 895


>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 670 SPQSSTAGDKPLPIYTTEP 726
           SP SST+ DK  P++T  P
Sbjct: 44  SPSSSTSVDKKKPLFTKSP 62


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/62 (19%), Positives = 29/62 (46%)
 Frame = -2

Query: 699 LISSSGRLWAVDDDDEVQKQNSSVSNLFNTLSHSYVC*YVTESFEHDFGPLQNPSKIGIL 520
           ++ + G  +  +  ++V K N   SN+ N L  + +  +     + D   +Q+   IG+ 
Sbjct: 293 MVLAFGNQYTAEQQEDVSKSNFHASNIGNRLFSAALSIFPLVLLQSDVSAVQSSLLIGLY 352

Query: 519 IK 514
           ++
Sbjct: 353 LQ 354


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 723 LSGVDWERLISSSGRLWAVDDDDEVQKQNSSV 628
           ++ VDW    SS G+L ++ DD  V+  NSS+
Sbjct: 440 VTAVDW----SSEGQLASISDDGSVRVWNSSL 467


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 732 QTGLSGVDWERLISSSGRLWAVDD 661
           QT  S VDW  L+ +S  L +VD+
Sbjct: 239 QTSESAVDWNYLLKTSDDLLSVDE 262


>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 657 DEVQKQNSSVSNLFNTLSHSYVC*YVTESFEHDFGPLQNPSKIGILI 517
           + +QK+   VSN  +++     C  VT      FGP    ++I  LI
Sbjct: 220 ENIQKRKEEVSNFLHSIKEDINCRVVT--IHDPFGPTITDAEIDSLI 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,109,694
Number of Sequences: 5004
Number of extensions: 64310
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)