Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4889
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0325 - 7467862-7468054,7468668-7468752,7469124-7469290,747...    31   0.95 
08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,448...    30   2.2  
07_03_0025 + 12587868-12588429,12591820-12592031,12592212-125926...    29   3.9  
04_03_0899 + 20662671-20662818,20663655-20663959,20664080-206642...    29   3.9  
01_01_0586 - 4353919-4353973,4354623-4354940,4355043-4355323           29   3.9  
04_02_0033 - 8997041-8997754                                           29   5.1  
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384...    28   8.9  

>03_02_0325 -
           7467862-7468054,7468668-7468752,7469124-7469290,
           7470130-7471133
          Length = 482

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -2

Query: 213 RSVVWCSAALSSPLVCSEIWSDQRLGLRPLGRFPSTFPVTIRRSKLPLHVNRTKIHLVHS 34
           R ++WC    +  L C E    + +G  P G+     P TIRR K    V +    + +S
Sbjct: 292 RGIIWCGDITAEGLRCGEAVVKKSVG--PSGKPSQVKPSTIRRMKRARRVTKMSNRVANS 349

Query: 33  LV 28
           ++
Sbjct: 350 IL 351


>08_01_0514 +
           4481383-4481903,4482532-4484590,4485038-4485107,
           4485434-4485660,4486238-4486324,4486408-4487114,
           4487206-4487270,4487323-4487837,4487898-4487991,
           4488116-4488398,4488494-4488689,4488913-4489254
          Length = 1721

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -2

Query: 711 DWERLISSSGRLWAVDDDDEVQKQNSSVSNLFNTLSHSYVC*YVTESFEHDF 556
           +W+R++++ G + A D DD++ K   S+S  ++   H   C      F  D+
Sbjct: 287 EWKRVLTAIGSVLAKDPDDDIMKSILSLS-YYDLPHHLRACLLYLSIFPEDY 337


>07_03_0025 +
           12587868-12588429,12591820-12592031,12592212-12592603,
           12592608-12592965
          Length = 507

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 162 EIWSDQRLGLRPLGRFPSTFPVTIRRSKLPLHVNRTKI 49
           E+    + G+RP    P + P +  RS  P HV RTKI
Sbjct: 275 ELPGSTKPGVRPNPSRPRSAPCSAARSLSPRHVTRTKI 312


>04_03_0899 +
           20662671-20662818,20663655-20663959,20664080-20664265,
           20665200-20665274,20665596-20665652
          Length = 256

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -1

Query: 553 PPSKPLENWHTN*VPMTIQYFKQFDPLSLLG*SGLA 446
           P   P+E+WHT  VP  +  FK+   ++L+G SG++
Sbjct: 215 PVVLPIEHWHTPLVPCNMLTFKK--GITLIGTSGIS 248


>01_01_0586 - 4353919-4353973,4354623-4354940,4355043-4355323
          Length = 217

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 627 ILSYSVFVLHHHHQQPTVVHCWR*ASPNLHH 719
           +L YS  VL HHH           + P LHH
Sbjct: 43  VLGYSPLVLDHHHPTTAAASSHAPSPPTLHH 73


>04_02_0033 - 8997041-8997754
          Length = 237

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 141 LGLRPLGRFPSTFPVTIRRSKLPLHVNRTKI 49
           LG+RP    P + P +  RS  P HV +TKI
Sbjct: 71  LGVRPNPSRPQSAPRSAARSLSPRHVTKTKI 101


>03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,
            3844861-3844958,3845313-3845502
          Length = 1005

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 714  VDWERLISSSGRLWAVDDDDEVQKQNSSVSNLFNTLSHSYV 592
            +D+  L +S      +DD D+++K+N S S  F  L+ S +
Sbjct: 892  IDFFILRNSMQEKSTMDDPDQLEKKNESCSTFFGRLNDSLI 932


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,022,071
Number of Sequences: 37544
Number of extensions: 420027
Number of successful extensions: 1119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)