Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4879
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.8  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    25   8.5  

>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -2

Query: 219 FSGIMA*IIY*QPCLPLLYWEFTRINRRLA*LCC 118
           F G+   I+    C P +YW + ++N++   + C
Sbjct: 378 FIGVGVGIVCAGLCTPFIYWHYLKVNKKRNGVIC 411


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -1

Query: 238 YMISVLIFGNYGLNYLLTALPPITLLGVYTDKPPPCLIVLRSKLASHFENSESGYSMQLR 59
           Y I   + GN  ++Y++  LP    LG  T +P    I +   L  HF+NS + ++  L 
Sbjct: 345 YTIPFFLQGN--IDYVVAPLPG---LGPSTAEP----IAVEDLLRDHFQNSYTSHTTSLE 395

Query: 58  LA 53
           +A
Sbjct: 396 VA 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,092,399
Number of Sequences: 5004
Number of extensions: 65557
Number of successful extensions: 152
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)