Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4879
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0436 - 22920106-22920348,22920569-22920884,22929569-229300...    32   0.41 
07_03_1166 - 24461881-24462013,24462255-24462643,24462877-244629...    29   3.8  
12_02_0796 + 23224357-23224427,23225714-23225810,23226335-232271...    28   8.8  
08_02_0260 + 14990324-14990916,14991055-14991245,14997427-149974...    28   8.8  
05_02_0078 - 6386278-6386291,6386462-6386594,6386721-6388613,639...    28   8.8  
01_06_1318 - 36261483-36262811                                         28   8.8  

>02_04_0436 -
           22920106-22920348,22920569-22920884,22929569-22930027,
           22930187-22930401,22930741-22930803,22930814-22930830,
           22931141-22931389,22931546-22931774,22932427-22932534,
           22932954-22933094,22933669-22933729,22933974-22934095,
           22934533-22934760,22934857-22935000
          Length = 864

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 16/62 (25%), Positives = 32/62 (51%)
 Frame = -1

Query: 322 SQCDAIPVEARVSARHCTLKLYIACIVLYMISVLIFGNYGLNYLLTALPPITLLGVYTDK 143
           S+  AI  +     RHC L+  +  +V + +++L+FG   +  +   LP   LL +++ +
Sbjct: 388 SKAHAITKQGHSYQRHCALETELPWLVWHRLALLLFGTIAVLVIAVELPAYQLL-IFSPR 446

Query: 142 PP 137
            P
Sbjct: 447 NP 448


>07_03_1166 -
           24461881-24462013,24462255-24462643,24462877-24462948,
           24463718-24463887,24464232-24464362,24464744-24464860,
           24464969-24465351,24465582-24465764
          Length = 525

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
 Frame = +1

Query: 28  YLNVKRLSKPTLIALN--SRSPSFQNGTLACFAAQLGKAAVYPC--KLPIE*WEAGLSIN 195
           Y++ K LS+  L++ N  S SP+F+  TL C  A +G   + PC     I    A L+ +
Sbjct: 354 YVSSKTLSEKELLSYNGSSPSPAFEVVTLTC--AVVGGDTLQPCPWSSSIPVILAPLTGD 411

Query: 196 NLSHNSRK 219
             SHNS K
Sbjct: 412 EPSHNSLK 419


>12_02_0796 +
           23224357-23224427,23225714-23225810,23226335-23227146,
           23227593-23227619,23227620-23229624
          Length = 1003

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 619 YKLQTRTFEASIYRAISPALWKIF 548
           YKL  R FE SI RAI P L  ++
Sbjct: 192 YKLDDRIFEPSIARAIDPRLPSLY 215


>08_02_0260 +
           14990324-14990916,14991055-14991245,14997427-14997495,
           14998134-14999221
          Length = 646

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 481 STRENIYEYAMIIIEAVGIQQKGRSSTE 564
           +T+ ++Y Y M+I+  VG ++   +STE
Sbjct: 532 TTKSDVYSYGMLILHMVGERENINASTE 559


>05_02_0078 -
           6386278-6386291,6386462-6386594,6386721-6388613,
           6391153-6391239,6391691-6391765,6393982-6394327,
           6394428-6394450
          Length = 856

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 154 KLPIE*WEAGLSINNLSHNSRKLRH*SY 237
           K  +E  E G+SINN+ +NS K  H  Y
Sbjct: 126 KASLEESELGISINNICNNSNKWLHWGY 153


>01_06_1318 - 36261483-36262811
          Length = 442

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 43  RLSKPTLIALNSRSPSFQNGTLACFAAQLGKAAVYPCKLP 162
           R +KP L ALN  + +FQ     CF    G+A   P +LP
Sbjct: 318 RQTKPWLPALNDPNFAFQEAFDTCFRVPQGRAP--PARLP 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,151,834
Number of Sequences: 37544
Number of extensions: 385640
Number of successful extensions: 711
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)