Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4879
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81129-1|CAB03408.1|  350|Caenorhabditis elegans Hypothetical pr...    35   0.052
U23172-11|AAL27245.1|  327|Caenorhabditis elegans Hypothetical p...    30   1.5  
U23172-10|AAM22066.1|  352|Caenorhabditis elegans Hypothetical p...    30   1.5  
U23172-9|AAK67227.1|  362|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U23172-7|AAK67228.1|  376|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81129-2|CAB03407.1|  315|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U41268-2|AAA82434.1|  201|Caenorhabditis elegans Temporarily ass...    28   6.0  
AF024502-8|AAY43996.1|  297|Caenorhabditis elegans Hypothetical ...    28   6.0  
AF014939-3|AAB63927.1|  831|Caenorhabditis elegans Hypothetical ...    28   6.0  

>Z81129-1|CAB03408.1|  350|Caenorhabditis elegans Hypothetical
           protein T23F1.3 protein.
          Length = 350

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -1

Query: 664 CLNLAYHIFKISLHIYKLQTRTFEASIYRAISPALWKIFP 545
           CLN+ + + K S+   KLQ + F+A I++ I P L+ + P
Sbjct: 225 CLNMKHQLKKFSIANGKLQRQFFKALIFQCIGPTLFLVLP 264


>U23172-11|AAL27245.1|  327|Caenorhabditis elegans Hypothetical
           protein F25B5.3c protein.
          Length = 327

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 624 IYTSCKQEHSKRRSTEQYHPLCGRSSLLLYTYSLNDYHCIFINILPSGP 478
           I+T CK     ++ T  +H + GR +++L   S+ D H + + +   GP
Sbjct: 232 IHTFCKNSSVIQKETSFFHDIAGRVNVILLGDSMGDIH-MDVGVERDGP 279


>U23172-10|AAM22066.1|  352|Caenorhabditis elegans Hypothetical
           protein F25B5.3d protein.
          Length = 352

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 624 IYTSCKQEHSKRRSTEQYHPLCGRSSLLLYTYSLNDYHCIFINILPSGP 478
           I+T CK     ++ T  +H + GR +++L   S+ D H + + +   GP
Sbjct: 257 IHTFCKNSSVIQKETSFFHDIAGRVNVILLGDSMGDIH-MDVGVERDGP 304


>U23172-9|AAK67227.1|  362|Caenorhabditis elegans Hypothetical
           protein F25B5.3a protein.
          Length = 362

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 624 IYTSCKQEHSKRRSTEQYHPLCGRSSLLLYTYSLNDYHCIFINILPSGP 478
           I+T CK     ++ T  +H + GR +++L   S+ D H + + +   GP
Sbjct: 267 IHTFCKNSSVIQKETSFFHDIAGRVNVILLGDSMGDIH-MDVGVERDGP 314


>U23172-7|AAK67228.1|  376|Caenorhabditis elegans Hypothetical
           protein F25B5.3b protein.
          Length = 376

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 624 IYTSCKQEHSKRRSTEQYHPLCGRSSLLLYTYSLNDYHCIFINILPSGP 478
           I+T CK     ++ T  +H + GR +++L   S+ D H + + +   GP
Sbjct: 281 IHTFCKNSSVIQKETSFFHDIAGRVNVILLGDSMGDIH-MDVGVERDGP 328


>Z81129-2|CAB03407.1|  315|Caenorhabditis elegans Hypothetical
           protein T23F1.4 protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -1

Query: 661 LNLAYHIFKISLHIYKLQTRTFEASIYRAISPALWKIFP 545
           LN+   + K S+   KLQ + F+A ++++I P ++ + P
Sbjct: 222 LNMKEELKKFSVVNRKLQRQFFKALVFQSIGPTVFLVLP 260


>U41268-2|AAA82434.1|  201|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 18 protein.
          Length = 201

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
 Frame = -1

Query: 640 FKISLHIYKLQTRTFEASI---YRAISPALWKIFPFV----VYLQPQ*LSLHIHKYSPEW 482
           +  +LH Y+    T + S    Y   +P  W+ + F     +Y+ P   SL  H+Y+P W
Sbjct: 48  YSSTLHKYRRDYDTLDDSNIDRYTFYTPFYWQTYRFAARRQLYVDPIPHSLG-HEYAPFW 106

Query: 481 TRY 473
           +RY
Sbjct: 107 SRY 109


>AF024502-8|AAY43996.1|  297|Caenorhabditis elegans Hypothetical
           protein M151.8 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 199 NYLLTALPPITLLGVYTDKPPPCLIVLRSKL 107
           N+ +   P I  LGV+T+  PP + +   KL
Sbjct: 156 NHFMKMFPSIETLGVFTESMPPSIYIRNLKL 186


>AF014939-3|AAB63927.1|  831|Caenorhabditis elegans Hypothetical
           protein ZC132.4 protein.
          Length = 831

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 525 GCRYTTKGKIFHRAGDIAR*IDASNVLVCNLYICKLILKM 644
           GC Y + G +F+R   +    D+  ++ CN +I K+ LK+
Sbjct: 198 GCFYPSSGCLFYRIYAVPTTNDSFEIMKCNEWIEKVHLKV 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,881,620
Number of Sequences: 27780
Number of extensions: 358504
Number of successful extensions: 780
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)