Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4874
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0071 - 20675501-20675830,20676120-20676286,20676472-206766...    33   0.29 
06_03_1219 - 28491185-28494415                                         29   4.8  
01_05_0490 + 22672241-22674679                                         28   6.3  
04_04_1500 + 34010819-34011016,34013267-34013308,34014195-340142...    28   8.4  
04_04_0207 + 23602065-23604315,23604611-23605116                       28   8.4  

>09_06_0071 -
           20675501-20675830,20676120-20676286,20676472-20676619,
           20676768-20677205,20677667-20677741,20678000-20678283,
           20678940-20679159
          Length = 553

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 539 GAAIPANGSNSFVGFVFIHTGSVNPSLISGSL 444
           GA+IPA+      GF ++H+ S NP++  G+L
Sbjct: 474 GASIPADAKTGCKGFQYLHSTSPNPNVAMGAL 505


>06_03_1219 - 28491185-28494415
          Length = 1076

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -2

Query: 703 GVFRPSLSPWTTLKCRGSGSLPSFRSQAGLDYSGVYQNNISRFRV 569
           G   P+LS WT+L+C    S        G+D+SG+  +N++ F V
Sbjct: 313 GKLPPALSNWTSLRCIDLRSNRFTGDLTGIDFSGL--DNLTIFDV 355


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 518 RSPGSPPPPEDSFFYIRYPKSG 583
           R P  PPPP  S FY  + K G
Sbjct: 606 RPPPPPPPPPSSIFYNLFKKGG 627


>04_04_1500 +
           34010819-34011016,34013267-34013308,34014195-34014204,
           34014526-34014586,34014621-34014678,34015266-34015412,
           34015643-34016205,34018942-34019728
          Length = 621

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 552 ESSGGGGDPGERFKFFCW 499
           E  GGGGD GE   + CW
Sbjct: 274 ELRGGGGDDGEDCGYLCW 291


>04_04_0207 + 23602065-23604315,23604611-23605116
          Length = 918

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 482 TGSVNPSLISGSLEAIFI 429
           TG V PSL+SG+L A+F+
Sbjct: 482 TGRVPPSLVSGALPAVFL 499


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,638,971
Number of Sequences: 37544
Number of extensions: 299527
Number of successful extensions: 956
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)