Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4874
(707 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC031237-1|AAH31237.1| 123|Homo sapiens hypothetical protein LO... 32 2.3
AK098688-1|BAC05379.1| 168|Homo sapiens protein ( Homo sapiens ... 32 2.3
Z98048-5|CAI20493.1| 309|Homo sapiens protein ( Human DNA seque... 31 4.0
CR456468-1|CAG30354.1| 309|Homo sapiens dJ408N23.2 protein. 31 4.0
BC112135-1|AAI12136.1| 309|Homo sapiens DnaJ (Hsp40) homolog, s... 31 4.0
AF085232-1|AAL40391.1| 309|Homo sapiens HSC3 protein. 31 4.0
X70476-1|CAA49900.1| 906|Homo sapiens subunit of coatomer compl... 30 9.3
X55019-1|CAA38759.1| 517|Homo sapiens acetylcholine receptor de... 30 9.3
BC093925-1|AAH93925.1| 517|Homo sapiens cholinergic receptor, n... 30 9.3
BC093923-1|AAH93923.1| 517|Homo sapiens cholinergic receptor, n... 30 9.3
BC000326-1|AAH00326.1| 906|Homo sapiens coatomer protein comple... 30 9.3
AC092165-2|AAY24102.1| 517|Homo sapiens unknown protein. 30 9.3
>BC031237-1|AAH31237.1| 123|Homo sapiens hypothetical protein
LOC338579 protein.
Length = 123
Score = 31.9 bits (69), Expect = 2.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 598 KPPNSQDPLVNETKEVTRCLGISTSSKEKDWVETHP 705
KPP+ PLV T + +CLG +TS K + E P
Sbjct: 8 KPPDEAAPLVEGTADKIQCLGKATSGKFEQSAEETP 43
>AK098688-1|BAC05379.1| 168|Homo sapiens protein ( Homo sapiens
cDNA FLJ25822 fis, clone TST07893. ).
Length = 168
Score = 31.9 bits (69), Expect = 2.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 598 KPPNSQDPLVNETKEVTRCLGISTSSKEKDWVETHP 705
KPP+ PLV T + +CLG +TS K + E P
Sbjct: 8 KPPDEAAPLVEGTADKIQCLGKATSGKFEQSAEETP 43
>Z98048-5|CAI20493.1| 309|Homo sapiens protein ( Human DNA sequence
from clone RP3-408N23 on chromosome 22q13. ).
Length = 309
Score = 31.1 bits (67), Expect = 4.0
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -1
Query: 377 LTSITSKLLDNSILNGIIILSRNDKIASSKNIN 279
LTS +S DNS ++ I ++ +DKI + +NIN
Sbjct: 168 LTSFSSLAFDNSGMDNYISVTTSDKIVNGRNIN 200
>CR456468-1|CAG30354.1| 309|Homo sapiens dJ408N23.2 protein.
Length = 309
Score = 31.1 bits (67), Expect = 4.0
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -1
Query: 377 LTSITSKLLDNSILNGIIILSRNDKIASSKNIN 279
LTS +S DNS ++ I ++ +DKI + +NIN
Sbjct: 168 LTSFSSLAFDNSGMDNYISVTTSDKIVNGRNIN 200
>BC112135-1|AAI12136.1| 309|Homo sapiens DnaJ (Hsp40) homolog,
subfamily B, member 7 protein.
Length = 309
Score = 31.1 bits (67), Expect = 4.0
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -1
Query: 377 LTSITSKLLDNSILNGIIILSRNDKIASSKNIN 279
LTS +S DNS ++ I ++ +DKI + +NIN
Sbjct: 168 LTSFSSLAFDNSGMDNYISVTTSDKIVNGRNIN 200
>AF085232-1|AAL40391.1| 309|Homo sapiens HSC3 protein.
Length = 309
Score = 31.1 bits (67), Expect = 4.0
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -1
Query: 377 LTSITSKLLDNSILNGIIILSRNDKIASSKNIN 279
LTS +S DNS ++ I ++ +DKI + +NIN
Sbjct: 168 LTSFSSLAFDNSGMDNYISVTTSDKIVNGRNIN 200
>X70476-1|CAA49900.1| 906|Homo sapiens subunit of coatomer complex
protein.
Length = 906
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 439 ASSDPEIKDGFTLPVWMKTKPTKEFEPFAGIAAPTGRFILL 561
A D EIKDG LP+ +K + E P P GRF+++
Sbjct: 329 AMGDAEIKDGERLPLAVKDMGSCEIYPQTIQHNPNGRFVVV 369
>X55019-1|CAA38759.1| 517|Homo sapiens acetylcholine receptor delta
subunit protein.
Length = 517
Score = 29.9 bits (64), Expect = 9.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 218 KRILYLFNNYVFCCLLNYVINLYFYL 295
K + Y+ N V C L+++++NL FYL
Sbjct: 245 KPLFYIINILVPCVLISFMVNLVFYL 270
>BC093925-1|AAH93925.1| 517|Homo sapiens cholinergic receptor,
nicotinic, delta protein.
Length = 517
Score = 29.9 bits (64), Expect = 9.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 218 KRILYLFNNYVFCCLLNYVINLYFYL 295
K + Y+ N V C L+++++NL FYL
Sbjct: 245 KPLFYIINILVPCVLISFMVNLVFYL 270
>BC093923-1|AAH93923.1| 517|Homo sapiens cholinergic receptor,
nicotinic, delta protein.
Length = 517
Score = 29.9 bits (64), Expect = 9.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 218 KRILYLFNNYVFCCLLNYVINLYFYL 295
K + Y+ N V C L+++++NL FYL
Sbjct: 245 KPLFYIINILVPCVLISFMVNLVFYL 270
>BC000326-1|AAH00326.1| 906|Homo sapiens coatomer protein complex,
subunit beta 2 (beta prime) protein.
Length = 906
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 439 ASSDPEIKDGFTLPVWMKTKPTKEFEPFAGIAAPTGRFILL 561
A D EIKDG LP+ +K + E P P GRF+++
Sbjct: 329 AMGDAEIKDGERLPLAVKDMGSCEIYPQTIQHNPNGRFVVV 369
>AC092165-2|AAY24102.1| 517|Homo sapiens unknown protein.
Length = 517
Score = 29.9 bits (64), Expect = 9.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 218 KRILYLFNNYVFCCLLNYVINLYFYL 295
K + Y+ N V C L+++++NL FYL
Sbjct: 245 KPLFYIINILVPCVLISFMVNLVFYL 270
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,253,151
Number of Sequences: 237096
Number of extensions: 1751658
Number of successful extensions: 7743
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7718
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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