Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4873
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.5  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      26   4.3  
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      26   4.3  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   4.3  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   4.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   5.7  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   7.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   7.5  
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    25   10.0 
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    25   10.0 

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 20/83 (24%), Positives = 38/83 (45%)
 Frame = +1

Query: 280  TTYHGKTPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSXYITPNTYIASG 459
            T  +  TP+ +ST+  +SIP+ S  +  S+  I   +     + I  S  +  +T I S 
Sbjct: 1264 TVVNSSTPITSSTALNTSIPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSS 1323

Query: 460  PLGATTYTTPFVQTVPIASTASL 528
             +  T  +TP   +  + S+  +
Sbjct: 1324 TVVNT--STPITSSSVLNSSTPI 1344


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 433 TPNTYIASGPLGATTYTTPFVQTVPIASTASLPVAAHLI 549
           TP   +++      T  TPF    PI S++S P A H +
Sbjct: 170 TPFRSVSTTSSSNDTSITPFGDQTPILSSSSDPYATHRV 208


>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 152 SCIPHPWSTLHRMATLISSRRGLLHM-LRISLLHHTLLFLP 271
           S I  PW T+    + ISS  GL+   L ++L+ H   ++P
Sbjct: 225 SMIVDPWGTVIAQYSDISSPNGLIFADLDLNLVDHVRTYIP 265


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
 Frame = +1

Query: 325 VSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSXYIT------PNTYIASGPLGATTYTT 486
           VSS+PL S   +  +H      P  P SY++ +   +       + +  S P    +Y+T
Sbjct: 460 VSSVPLTSNNFSSISHSSASSLPITPSSYLSNTTLHSSVQSSQSSQFTVSVPSSTQSYST 519

Query: 487 PFVQTVPIASTASL 528
               T PI  + SL
Sbjct: 520 SSNFTTPITISTSL 533


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 403 VSYIAPSXYITP-NTYIASGPLGATTY 480
           V Y++P+   TP + +I   PLG +TY
Sbjct: 806 VQYVSPALKATPPSVWIPKDPLGLSTY 832


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 433 TPNTYIASGPLGATTYTTPFVQTVPIASTASLPV 534
           T +T I +G  G+++ +TP   TVP  ST+S  +
Sbjct: 230 TTSTSIPTG--GSSSLSTPITPTVPPTSTSSTSI 261



 Score = 24.6 bits (51), Expect = 10.0
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +1

Query: 298 TPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSXYITPNTYIASGPLG-AT 474
           T    +T   +S P+I++  + ++      S   P+    PS   +  T  +  P G ++
Sbjct: 73  TSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPL----PSTSTSCTTSTSIPPTGGSS 128

Query: 475 TYTTPFVQTVPIASTASLPV 534
           + +TP   TVP  ST+S  +
Sbjct: 129 SLSTPITPTVPPTSTSSTSI 148


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +1

Query: 337 PLISQPIAYSAHFIKKRSPQWPVSYIAPSXYITPNTYIASGPLGATTYTTPFVQTVPIAS 516
           P+  QPIA +      ++   P+   A     TPNT  +   L A        Q VP+ S
Sbjct: 232 PMAGQPIAIAPVPAPNQAALPPIPPQALPANGTPNTLASPVTLPAANSAVQNAQPVPMTS 291

Query: 517 TASLPV 534
           + ++ V
Sbjct: 292 SPAMAV 297


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 415  APSXYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPVAA 540
            AP+    PNT  A+ P+ +TT T     TV  +  A   V +
Sbjct: 1028 APAMQARPNTTQAAAPVTSTTTTIKQATTVSASKPAPSTVTS 1069


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 14/74 (18%), Positives = 28/74 (37%)
 Frame = +1

Query: 310 ASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSXYITPNTYIASGPLGATTYTTP 489
           A T + + +  ++QP+   A     +    P +    S    P  +++ G         P
Sbjct: 255 AGTVFYNPVSRLTQPLPSLASTASPQQVSPPAAPSTTSGEAIPENFVSYGAQVFPATQMP 314

Query: 490 FVQTVPIASTASLP 531
           F+Q   +    S+P
Sbjct: 315 FLQQPKVTQNISIP 328


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 134 LIVVDPGETTVVRDVTGGVKKTPGSAAATANKAHTINLNIVV 9
           LI  DP  T +  ++ GG+ +    A    +    +NLNI +
Sbjct: 333 LITNDPKTTAIFVNIFGGIVRCDVIAKGLISVVSALNLNIPI 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,061,941
Number of Sequences: 5004
Number of extensions: 36879
Number of successful extensions: 121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)