Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4873
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical pr...    28   5.2  

>U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical
           protein F53B3.2 protein.
          Length = 634

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 409 YIAPSXYITPNTYIASGPLGATTYTTPFVQTVPIASTASLP 531
           +I PS  I  N +    P     YTT    T P++ TA LP
Sbjct: 295 FIRPSSIIRNNVWKKVTPSVTPEYTTSVFWTTPMSVTAELP 335


>Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical
           protein K02E2.8a protein.
          Length = 188

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +1

Query: 373 FIKKRSPQWPVSYIAPSXYITPNTYIASGPLGATTYTTPFVQTVPIASTAS 525
           F+K  +   P  ++ P   + P T   +  + A T T P   T P+++T +
Sbjct: 7   FVKLAAACIPTQFVTP---LNPGTITTTTTISAPTTTVPITTTNPVSTTTT 54


>U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical
           protein F56D3.1 protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 436 PNTYIASGPLGATTYTT-PFVQTVPIASTASLPVA 537
           P T   + P  ATT  T PFVQT P A+ A+LP A
Sbjct: 114 PTTIRTTRPPPATTIRTIPFVQTTP-ATFATLPPA 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,813,118
Number of Sequences: 27780
Number of extensions: 225413
Number of successful extensions: 783
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)