Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4872
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0657 - 19749835-19751942,19753123-19753561                       31   0.58 
10_08_0860 - 21136509-21136997                                         29   4.1  
05_05_0388 - 24584629-24584744,24585270-24585371,24585932-245859...    28   5.4  
03_02_0503 + 8951824-8952642,8953159-8953770,8953938-8954042           28   5.4  
04_04_0599 - 26516854-26517452,26517547-26517963,26518044-265183...    28   7.2  
01_06_1234 + 35599008-35599640,35600210-35600477,35600550-35600788     27   9.5  

>08_02_0657 - 19749835-19751942,19753123-19753561
          Length = 848

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 409 VSVAAVDENGDYVG--VIINGIVRREEVYYTDKSEDCPNPKFR 531
           +S A ++E G + G  V + G  RRE V Y  K E CP+ + R
Sbjct: 51  LSEATMEELGIFRGDLVTLRGRRRREAVCYAQKDESCPDGRLR 93


>10_08_0860 - 21136509-21136997
          Length = 162

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 143 GKCQGGKIHSRCTNCRRSFRAWRSGLAKCPF 235
           G+C GG   SRC     +  A R+  AKCPF
Sbjct: 37  GRCNGGACRSRCAKPTPA-PARRAAGAKCPF 66


>05_05_0388 -
           24584629-24584744,24585270-24585371,24585932-24585987,
           24586090-24586124,24586620-24586697,24587224-24587595
          Length = 252

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 164 IHSRCTNCRRSFRAWRSGLAKCPFQLTPY 250
           + S C NC +SF+  +S L   P QL PY
Sbjct: 147 LQSNCPNCGKSFQILKSSLKDGP-QLCPY 174


>03_02_0503 + 8951824-8952642,8953159-8953770,8953938-8954042
          Length = 511

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 610 NRVTSLRQFCPRCELRGPSDPVLSGS 533
           N V  LRQ CP CE   PS PV++G+
Sbjct: 43  NVVRDLRQ-CPFCEPSPPSPPVVAGA 67


>04_04_0599 -
           26516854-26517452,26517547-26517963,26518044-26518394,
           26518651-26518748,26518875-26518945,26519638-26520318
          Length = 738

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
 Frame = -2

Query: 247 WCKLERTFCEAGSPSSKAAPAVRT----PRVYFSTLAFSRSKWPFSFKFTMPTCTCNSHI 80
           W +     C+ G   + ++  VR+    P+V  S  AF+RS W  + +          + 
Sbjct: 85  WSESLHGVCDNGPGVNFSSGPVRSATIFPQVILSAAAFNRSLWRAAARAIAVEARAMHNA 144

Query: 79  GKRSVTFRA*NLRV 38
           G+  +TF A N+ V
Sbjct: 145 GQAGLTFWAPNINV 158


>01_06_1234 + 35599008-35599640,35600210-35600477,35600550-35600788
          Length = 379

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +3

Query: 63  VTDLFPIWLLQVQVGIVNLKE----KGHFERENARVEKYTLGVRTAGAAFELGDPASQNV 230
           V  L P+  L VQ+ +  L++    +G    +NA  EKY   +R     F+   P ++ V
Sbjct: 223 VAGLPPVGCLPVQMTLAALRQPPRPQGCIAEQNAEAEKYNAKLRKMLTKFQSTSPGAKAV 282

Query: 231 RSSLH 245
            + ++
Sbjct: 283 YADIY 287


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,853,221
Number of Sequences: 37544
Number of extensions: 351949
Number of successful extensions: 1097
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)