Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4872
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...    31   0.53 
Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...    30   1.6  
Z99169-1|CAB16306.2|  966|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AB055112-1|BAB62293.1|  966|Caenorhabditis elegans VHA-7 protein.      29   2.1  
Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 409 VSVAAVDENGDYVG--VIINGIVRREEVYYTDKSEDCPNPKFR 531
           VS A +DE G + G  VI+ G  R+E V      E CPN K R
Sbjct: 47  VSQAKMDELGLFRGDAVILKGKKRKESVAIIVSDESCPNEKVR 89


>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 409 VSVAAVDENGDYVG--VIINGIVRREEVYYTDKSEDCPNPKFR 531
           +S A +DE G + G  VI+ G  RRE V     +++CPN K +
Sbjct: 47  LSQAKMDELGLFRGDSVILKGKKRRETVSIVLNADNCPNDKIK 89


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 409 VSVAAVDENGDYVG--VIINGIVRREEVYYTDKSEDCPNPKFR 531
           +S A +DE G + G  VI+ G  RRE V     +++CPN K +
Sbjct: 47  LSQAKMDELGLFRGDSVILKGKKRRETVSIVLNADNCPNDKIK 89


>Z99169-1|CAB16306.2|  966|Caenorhabditis elegans Hypothetical
           protein C26H9A.1 protein.
          Length = 966

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 105 GIVNLKEKGHFERENARVEKYTLGVRTAGAAFELGDPAS 221
           G++ L +K  FER   R  + T  VRT+ A+F + DP +
Sbjct: 242 GVLPLDKKESFERVLWRACRRTAFVRTSDASFTVNDPVT 280


>AB055112-1|BAB62293.1|  966|Caenorhabditis elegans VHA-7 protein.
          Length = 966

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 105 GIVNLKEKGHFERENARVEKYTLGVRTAGAAFELGDPAS 221
           G++ L +K  FER   R  + T  VRT+ A+F + DP +
Sbjct: 242 GVLPLDKKESFERVLWRACRRTAFVRTSDASFTVNDPVT 280


>Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical
           protein D2005.4 protein.
          Length = 1188

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/90 (21%), Positives = 41/90 (45%)
 Frame = +1

Query: 322 MNLAVNLLETPESRCTELDDYAAATLSDGVSVAAVDENGDYVGVIINGIVRREEVYYTDK 501
           +++  N +E PES   +  +     + D + V A ++NG    V  N    ++E    D 
Sbjct: 43  LHVIENKVEEPESAVVDEVEVPIEKIIDCLGVEAREDNGK---VEDNVFESQDEAAGLDA 99

Query: 502 SEDCPNPKFRRILKVLGHLDREARIWDKTA 591
            +D         ++ + H D+E ++ ++T+
Sbjct: 100 VKDTDKKDEAATMEAVKHTDKEVKVKNRTS 129


>U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical
           protein K08D10.5 protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/66 (31%), Positives = 29/66 (43%)
 Frame = +1

Query: 343 LETPESRCTELDDYAAATLSDGVSVAAVDENGDYVGVIINGIVRREEVYYTDKSEDCPNP 522
           LET    C E+    A     G +V+A     ++   IIN ++  + V  T K ED  N 
Sbjct: 22  LETAVGECLEIGVEYALPRDQGATVSARVHKANHHEAIINNLL-FQNVIITQKHED--ND 78

Query: 523 KFRRIL 540
             RR L
Sbjct: 79  HLRRFL 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,216,676
Number of Sequences: 27780
Number of extensions: 294920
Number of successful extensions: 902
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)