Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4869
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 28 1.0
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 28 1.4
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 27 1.8
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 27 3.2
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 26 5.5
SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 5.5
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe... 26 5.5
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 25 7.3
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 25 9.7
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 25 9.7
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 263 RMIKKYNVIHCQIAETTTRDVWSILDNSRDEVW 165
+ KK+ Q+++ T R VW I++N+ +VW
Sbjct: 480 KRFKKWPDEQRQLSKLTQRTVWDIVNNAPHDVW 512
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 285 YSFDSSAIDGVTLTGVTIRIQCKFAWGLFTKKSVK 389
+ FD+S++D V+LT + R+Q + + F+K K
Sbjct: 587 HKFDASSVDLVSLTRIMERLQTRVEYQSFSKSGRK 621
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 257 IKKYNVIHCQIAETTT-RDVWSILDNSRDEVWAIKAL*RWH 138
I K N C ++ TT+ + WS LD+ D +++ +A W+
Sbjct: 372 IAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWY 412
>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 26.6 bits (56), Expect = 3.2
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Frame = -2
Query: 332 YAGKSNAIYRRRVERILKDLVASRMIKKYNVI---H---------CQIAETTTRDVWSIL 189
Y G+ N Y+ ++KD R++ NV+ H C IA TT +
Sbjct: 261 YEGERNLFYKDLSNEVIKDSTFQRLVNFPNVLVTSHQAFFTTEALCSIAHTTLKSASDFY 320
Query: 188 DNSRDE 171
NS DE
Sbjct: 321 TNSLDE 326
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +3
Query: 138 VPSLQRFYSPYLIP-RIIENTPHIS 209
+PSL RF P L+P + IE TP IS
Sbjct: 579 LPSLDRFVLPKLLPGKPIEFTPPIS 603
>SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 73
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2
Query: 611 SISKIYATLLCYLTMTTPLLTCSDRKKPIEKNLPSLHIVIVMVCLSEIKCFS 456
S SK + L CY L CS R KP +L L + +++C + + F+
Sbjct: 16 SYSKTFL-LSCYCVSIYRLEECSGRFKPSSYSLHLLKSLSIIICENPSQTFN 66
>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 325
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -2
Query: 287 ILKDLVASRMIKKYNVIHCQIAETTTRD 204
+LK++VA KY V++ +IAET+ D
Sbjct: 274 LLKNMVAKFEAGKYKVLNKKIAETSLTD 301
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 257 IKKYNVIHCQIAETTT-RDVWSILDNSRDEVWAIKAL*RWH 138
I K + C ++ TT+ + WS LD+ D +++ +A W+
Sbjct: 368 IAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWY 408
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 536 KKPIEKNLPSLHIVIVMVCLSEIKCFSSKKI 444
KK +EK+LPS I+ V LS+++ + K I
Sbjct: 594 KKDVEKSLPSKSERILRVELSDLQMYWYKNI 624
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -2
Query: 227 IAETTTRDVWSILDNSRDEVWAIKAL*RWHAVSQ*SKQIENIKSVAKC 84
+ E + V + +NS +AIK L + H + + ++ NI+ A C
Sbjct: 105 LGEGSYSTVLTATENSTKREYAIKVLDKRHIIKEKKEKYVNIEKEALC 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,070
Number of Sequences: 5004
Number of extensions: 49174
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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