Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4869
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73974-1|CAA98270.2|  349|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z69646-3|CAA93476.2|  630|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF497828-1|AAM18106.1|  630|Caenorhabditis elegans putative Na-H...    27   8.9  

>Z73974-1|CAA98270.2|  349|Caenorhabditis elegans Hypothetical
           protein F29F11.3 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = -2

Query: 392 LFDRFFS-KQSPC----KFTLYSYCYAGKSNAIYRRRVERILKDLVASRMIKKYNVIHCQ 228
           ++D  F  K++ C    K + Y+   A  S   YR+ +ER+LK+    ++     ++ C 
Sbjct: 141 MYDEDFKLKENECNGVEKISDYNQLIASCSVPTYRKELERVLKEKCLQKIACSMGILKCM 200

Query: 227 IAE 219
           + +
Sbjct: 201 VPD 203


>Z69646-3|CAA93476.2|  630|Caenorhabditis elegans Hypothetical
           protein F57C7.2a protein.
          Length = 630

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +3

Query: 93  YTFNILNLFRLLTDGVPSLQRFYSPYLIP--RIIENT---PHISSSSFRYLTMDDVVLLD 257
           Y F+   +  LLT   PSL++   P+ +P   ++ ++    ++S+  F  +    + L+D
Sbjct: 562 YHFDASFMKPLLTHATPSLEQTLPPFCLPLTSLLTSSRQRAYVSAEPFNTIVQSGIPLID 621

Query: 258 HSRC 269
            S C
Sbjct: 622 GSGC 625


>AF497828-1|AAM18106.1|  630|Caenorhabditis elegans putative Na-H
           exchanger isoform 5a protein.
          Length = 630

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +3

Query: 93  YTFNILNLFRLLTDGVPSLQRFYSPYLIP--RIIENT---PHISSSSFRYLTMDDVVLLD 257
           Y F+   +  LLT   PSL++   P+ +P   ++ ++    ++S+  F  +    + L+D
Sbjct: 562 YHFDASFMKPLLTHATPSLEQTLPPFCLPLTSLLTSSRQRAYVSAEPFNTIVQSGIPLID 621

Query: 258 HSRC 269
            S C
Sbjct: 622 GSGC 625


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,817,239
Number of Sequences: 27780
Number of extensions: 263563
Number of successful extensions: 605
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)