Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4868
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical pr...    32   0.39 
AL032630-12|CAA21567.1|  260|Caenorhabditis elegans Hypothetical...    31   0.90 
Z29117-7|CAA82379.1|  159|Caenorhabditis elegans Hypothetical pr...    30   2.1  

>Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical
           protein F53B7.2 protein.
          Length = 572

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -1

Query: 284 FSLITN*INYI*FCENTFCYEYNTYFINLVSVNSI*NL--QLFTFIYPIIVSLIN 126
           F  ITN IN I FC+         +F+ ++S++ +  L    F  I+P+I S+ N
Sbjct: 94  FGFITNVINVIVFCDPEMRCSLVNHFLLVLSISDLVLLVCNFFMLIFPVIASMSN 148


>AL032630-12|CAA21567.1|  260|Caenorhabditis elegans Hypothetical
           protein Y62H9A.12 protein.
          Length = 260

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +3

Query: 105 RFLNSTYIYQ*YNNRIYKCKKLEISY*INRNKINEISIIFVAEGIFTKLNVINLICN 275
           R LN T   +  +   +K  K +I+Y    NK NE++++F   G    LN   + C+
Sbjct: 56  RDLNVTMTQKCSDPVTFKFGKCDIAYYRQENKQNELTLVFDQNGTLFLLNATRIACD 112


>Z29117-7|CAA82379.1|  159|Caenorhabditis elegans Hypothetical
           protein C48B4.7 protein.
          Length = 159

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 426 LNNPVLCLVFKIFPIKGTILPINLIYLT*QFC 331
           LN+P+LC     FPIK  +L + LI +  QFC
Sbjct: 12  LNSPLLC---GFFPIKLAVLLVQLIAIVIQFC 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,738,019
Number of Sequences: 27780
Number of extensions: 306513
Number of successful extensions: 527
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)