Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4864
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 37 0.003
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 36 0.005
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 31 0.17
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 27 2.8
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 26 4.9
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 26 6.5
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 25 8.6
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 25 8.6
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 8.6
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 25 8.6
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 25 8.6
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 37.1 bits (82), Expect = 0.003
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 27 GKHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDR 134
G++ YNF +P P S E + G+VRY ++ T++R
Sbjct: 273 GEYTYNFDLAIPNCFPESVEAKMGWVRYFLEATVER 308
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 36.3 bits (80), Expect = 0.005
Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 2/155 (1%)
Frame = +3
Query: 27 GKHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDRPWKFDQET--KMAFTVINALDLNL 200
G+++YNF + P S + + G V Y ++ +DR F ++ ++ +I + +
Sbjct: 191 GEYVYNFELPISCTYPESIQTDMGRVYYFLETLVDRSSTFSGKSTGRIPIELIRS-PCST 249
Query: 201 NPSYKEPIHIQLEKTFCCFCCASPPLAVDVQAPVSGYCPGQVIPLKIDIENKSNVQLHLV 380
+ + EPI + K++ L +VQ GQV+P+ V+ H +
Sbjct: 250 SVATSEPILV--SKSW------EDRLHYEVQVGEKCVVMGQVVPVNFKFTLLGEVKFHKL 301
Query: 381 KIFLRKVVTYRATSPSSATKKIKDVILTLQEGPAP 485
++FL + Y S +K K L L E AP
Sbjct: 302 RLFLME-RRYYYCRQRSVRRKEKTRQLLLYERSAP 335
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 31.1 bits (67), Expect = 0.17
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +3
Query: 642 TIGTVPLVG--MAGQPVPTAPVPDSPSQPAILPV 737
T ++P V MAGQP+ APVP +P+Q A+ P+
Sbjct: 222 TYYSIPAVNHPMAGQPIAIAPVP-APNQAALPPI 254
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 681 PVPTAPVPDSPSQPAILPVT 740
P+ VPDSP+ PA P T
Sbjct: 206 PITVTAVPDSPNPPAATPAT 225
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 532 IGGISMFRFQCFVVPAGAGPSCSVKITSLIFFVADEGDVARYVTTFLKNI-FTR*SWTL 359
+GG+ + + + + PSC ++ + F A D Y+ +L+++ FT +W L
Sbjct: 341 VGGVILIAYSGYEMFIAPYPSCPRRVMNRTFITAVIIDFFYYLAGYLQSMYFTTYTWIL 399
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 414 ATSPSSATKKIKDVILTLQEGPAPAGTTKHWNLNIEIPPIPPSNL 548
+TS S ++ + + + P+ N NI PP+PPSN+
Sbjct: 214 STSTSGSSSNVAAEVSN--DASQPSNQDSSLNSNIVKPPLPPSNV 256
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 730 SMAGWLGESGTGAV 689
SMAGWLG + TG++
Sbjct: 14 SMAGWLGGADTGSI 27
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 88 PSKDEGRTGGNVQVKLYMCFPCGISISFP 2
P +E + G V+LY C CG + FP
Sbjct: 119 PPNEEEKWNGVRNVELYQCNVCGHNQRFP 147
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/71 (19%), Positives = 28/71 (39%)
Frame = +3
Query: 492 TTKHWNLNIEIPPIPPSNLVNCNIIDLDYDLKVECVVSGMHLNMHDKKYITIGTVPLVGM 671
T W+ N+ P + ++ S +N KY+++GT+ L +
Sbjct: 146 TNDTWSTNLPTNPTTTAIYSTSGSSNITTPYSNRITNSNTSVNDITSKYLSVGTITLTTI 205
Query: 672 AGQPVPTAPVP 704
+G + T+ P
Sbjct: 206 SGSDLYTSTFP 216
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 336 KIDIENKSNVQLHLVKIFLRK 398
++D+ENK NV+ +IF RK
Sbjct: 508 EVDVENKQNVRTKYDRIFERK 528
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 645 IGTVPLVGMAGQPVPTAPVPDSPSQPA 725
+ + PL PVP +P+ SP++P+
Sbjct: 303 VSSYPLSRSVSTPVPMSPISISPAKPS 329
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,439,511
Number of Sequences: 5004
Number of extensions: 78578
Number of successful extensions: 246
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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