Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4864
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1027 - 30216859-30217212,30218769-30219178,30219395-30219800 32 0.42
08_02_0796 - 21300251-21300373,21300846-21301721 30 1.7
01_06_1740 - 39575614-39576981 30 1.7
05_03_0449 - 14161812-14162902,14163121-14163153,14164248-141644... 30 2.2
03_06_0187 + 32209924-32210634 30 2.2
01_06_1009 + 33796450-33796824,33796926-33796970,33797069-337971... 30 2.2
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 29 2.9
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 29 2.9
03_05_0815 + 27917516-27917767,27918024-27918110,27918281-279183... 29 2.9
01_07_0239 + 42222024-42222133,42222220-42222301,42222396-422224... 29 2.9
05_06_0281 + 26912419-26913099 29 3.9
05_05_0357 + 24377989-24378039,24378601-24378632,24378724-243788... 29 3.9
03_02_0800 + 11337206-11337532,11337634-11337957,11338060-113381... 29 5.1
01_01_0898 + 7078900-7079079,7080269-7080301,7080480-7080653,708... 28 6.8
07_03_0393 - 17630097-17630367,17630483-17630709 28 9.0
06_01_0486 - 3455030-3455770 28 9.0
01_01_1096 - 8659091-8659459,8660730-8661050,8661416-8661694,866... 28 9.0
01_01_0570 - 4231100-4232560 28 9.0
>04_04_1027 - 30216859-30217212,30218769-30219178,30219395-30219800
Length = 389
Score = 32.3 bits (70), Expect = 0.42
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 652 PYRW*VWPDSPCPLPPSRTRPASPP 726
P+RW + P +P P+PP P PP
Sbjct: 12 PFRWDLGPPAPAPVPPPPPPPPPPP 36
>08_02_0796 - 21300251-21300373,21300846-21301721
Length = 332
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +3
Query: 588 VECVVSGMHLNMHDKKYITIGTVPLVGMAGQPVPTAPVPDSPSQPAILPVT 740
++C G H N H + + PL+ + P P P P P LP T
Sbjct: 75 LKCAACGCHRNFHRRLPEAPPSPPLLALPPPPPPPPPPPPPPQPQQHLPRT 125
>01_06_1740 - 39575614-39576981
Length = 455
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 648 GTVPLVGMAGQPVPTAPVPDSPSQPAILP 734
G P AG P P A VP+ P +P + P
Sbjct: 119 GRTPWSAPAGHPAPPAAVPEEPQEPRLGP 147
>05_03_0449 -
14161812-14162902,14163121-14163153,14164248-14164457,
14166348-14167011,14167129-14167287,14167449-14167563,
14167672-14167867,14167965-14168286,14168695-14168865,
14169486-14169495,14169932-14170285,14172429-14172553
Length = 1149
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/48 (25%), Positives = 28/48 (58%)
Frame = +3
Query: 561 IIDLDYDLKVECVVSGMHLNMHDKKYITIGTVPLVGMAGQPVPTAPVP 704
++ ++ D++ +G+H+N+ + I + VP + + G P+P P+P
Sbjct: 751 LLAVESDIEEALASAGVHINISPR--IRVVVVPWLYVTGPPIPMLPLP 796
>03_06_0187 + 32209924-32210634
Length = 236
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 657 PLVGMAGQPVPTAPVPDSPSQPAI 728
P+ G AG VPT PVP P+ P +
Sbjct: 192 PIPGAAGGVVPTLPVPPLPAVPGV 215
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +3
Query: 642 TIGTVPLVGMAGQPVPTAP-VPDSPSQPAI--LPV 737
TI T+P V G +PT P VP P+ P + LPV
Sbjct: 125 TIPTIPGVPAVGPTIPTIPGVPTIPTVPGVPELPV 159
>01_06_1009 +
33796450-33796824,33796926-33796970,33797069-33797182,
33797679-33797759,33798038-33798211,33798353-33798438,
33799157-33799901
Length = 539
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +1
Query: 673 PDSPCPLPPSRTRPASP 723
P P PLPP R RPASP
Sbjct: 7 PSPPPPLPPLRRRPASP 23
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +3
Query: 528 PIPPSNLVNCNIIDLDYDLKVECVVSGMHLNMHDKKYITIGT--VPLVGMAGQPVPTAPV 701
P+P SN + ++ LD + + + + ++H K T V L+ AG+P TAP
Sbjct: 567 PVPVSNFLELRVLVLDVTIPI-LIGYQVEFHIHHVKEAARVTKIVALLDKAGKPSKTAPR 625
Query: 702 PDSPSQPAILPVT 740
Q A++ VT
Sbjct: 626 FLKSKQNAVVQVT 638
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +3
Query: 528 PIPPSNLVNCNIIDLDYDLKVECVVSGMHLNMHDKKYITIGT--VPLVGMAGQPVPTAPV 701
P+P SN + ++ LD + + + + ++H K T V L+ AG+P TAP
Sbjct: 567 PVPVSNFLELRVLVLDVTIPI-LIGYQVEFHIHHVKEAARVTKIVALLDKAGKPSKTAPR 625
Query: 702 PDSPSQPAILPVT 740
Q A++ VT
Sbjct: 626 FLKSKQNAVVQVT 638
>03_05_0815 +
27917516-27917767,27918024-27918110,27918281-27918394,
27919644-27919835,27919925-27921677,27921771-27922708,
27923587-27923859
Length = 1202
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = +2
Query: 419 ISFVGDKED*RRYFDTARGSCSSRYYKTLESEHRDTPDSTFES 547
+S V KED A SS Y+T EH D PD T ES
Sbjct: 476 LSLVEQKEDHTTSTINAIPRISSESYQTSALEHNDFPDITVES 518
>01_07_0239 +
42222024-42222133,42222220-42222301,42222396-42222486,
42222702-42222814,42222912-42222984,42223080-42223178,
42223201-42223406,42223693-42223832,42223912-42223969,
42224067-42224137,42224207-42224741
Length = 525
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 734 GQYGGLAGRVRDGGSGHGLSGHTYQRYG 651
G GG G GGSG+G+ G YQ+ G
Sbjct: 470 GGMGGAGGPRGGGGSGYGVGGPNYQQGG 497
>05_06_0281 + 26912419-26913099
Length = 226
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 666 GMAGQPVPTAPVPDSPSQPAILPVT 740
G+ G+P P AP P P+ P + P++
Sbjct: 143 GLLGRPWPKAPPPPDPNTPPVQPLS 167
>05_05_0357 +
24377989-24378039,24378601-24378632,24378724-24378818,
24379165-24379237,24379804-24379867,24380465-24380732,
24381132-24381202,24382028-24382084,24382302-24382403,
24382544-24382588,24383616-24383693,24384350-24384400,
24384475-24384556,24384883-24384956,24386093-24386144,
24386230-24386288,24386380-24386456,24386692-24386778,
24387011-24387101
Length = 502
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -1
Query: 116 DSVSDITMFPFKR*RQDRWQCAGKIIYVFPLWYF 15
DSV+ I+ +PF R R +CA +I +F LW++
Sbjct: 149 DSVAQISFYPFIRNDIIRTKCANVLISMF-LWFY 181
>03_02_0800 +
11337206-11337532,11337634-11337957,11338060-11338194,
11338280-11338519
Length = 341
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 587 LQVIIQIYNITVDEIRRWNRGYLYVQIPVFCSTGWSRT 474
L IQ+++ +DE+ +G+ Y + FC WS T
Sbjct: 119 LDADIQVFD-NIDELFELPKGHFYAVMDCFCEKTWSHT 155
>01_01_0898 +
7078900-7079079,7080269-7080301,7080480-7080653,
7080866-7083890,7084253-7084596
Length = 1251
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 227 HSIRKDVLLFLLRITTFSSGCAGSCIWLLSR 319
HS + L FLL + T + GC CI+L+ R
Sbjct: 901 HSNSRHFLRFLLPVVTVAFGCMVICIFLMIR 931
>07_03_0393 - 17630097-17630367,17630483-17630709
Length = 165
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 264 ASPPLAVDVQAPVSGYCPGQVIPLKIDI 347
+ P L D +P+ C G+V+P+K+++
Sbjct: 105 SDPNLGADNASPLLSDCTGEVVPVKVEL 132
>06_01_0486 - 3455030-3455770
Length = 246
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 673 PDSPCPLPPSRTRPASPPYCP 735
P SP P P T P+ PPY P
Sbjct: 129 PPSPPPYVPPPTPPSPPPYVP 149
>01_01_1096 -
8659091-8659459,8660730-8661050,8661416-8661694,
8661781-8661897,8662142-8662210,8663204-8663397,
8663552-8663633
Length = 476
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 9 EIEIPQGKHIYNFTCT--LPPVLPSSFEGEHGYVRYTVKVTLDRP 137
E+ P+ ++ N C P P ++ ++GY RY V D P
Sbjct: 335 ELSAPKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHP 379
>01_01_0570 - 4231100-4232560
Length = 486
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 734 GQYGGLAGRVRDGGSGHGLSG 672
G GG GR DGG G+GL+G
Sbjct: 294 GGVGGNTGRDFDGGKGNGLNG 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,470,261
Number of Sequences: 37544
Number of extensions: 552676
Number of successful extensions: 2366
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2334
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -