Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4863
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom... 31 0.20
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.61
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 29 0.81
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 29 0.81
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 29 0.81
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces... 28 1.4
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.3
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom... 25 7.6
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 25 7.6
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 25 10.0
>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 304
Score = 30.7 bits (66), Expect = 0.20
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 96 ISLSLCFLFIFTLIRLLVLMCSVLFYFCFFLSLVAIVLLL 215
I L L FIFT + LL + S L +F F+SL LLL
Sbjct: 189 IGLYLICWFIFTFLVLLCTVRSTLAFFSLFMSLDVCFLLL 228
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 29.1 bits (62), Expect = 0.61
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 500 SYYYLCNPKYTINSSIVKQGTWNTFGIIVFVKRTLISKLICV 375
+YYYL PK++ ++++ +NTF F K ++ IC+
Sbjct: 547 NYYYL--PKFSDTPGLLEEAYFNTFVFRAFSKNESLTSQICL 586
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 28.7 bits (61), Expect = 0.81
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 165 LFYFCFFLSLVAIVLLL-QVMYCIGPCALFYFIMYF 269
+F F + L + I+++L Q ++C G C F F+ F
Sbjct: 377 IFIFMWILPQIQIIVILAQPLHCSGSCKRFAFVAVF 412
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 28.7 bits (61), Expect = 0.81
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 153 MCSVLFYFCFFLSLVAIVLLLQVMYCIGPCALFYFIMY 266
M +LFYF FFL+L+ L +Y G + +FI Y
Sbjct: 1 MNKILFYFFFFLTLI----LSATVYLFGGPMMLFFINY 34
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 28.7 bits (61), Expect = 0.81
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -2
Query: 494 YYLCNPKYTINSSIVKQGTWNTFGIIVFVKRTLISKLICV-ISFI 363
YY N K + ++SIV +G + ++ ++KR +IS I ISFI
Sbjct: 1389 YYNGNQKLSYDTSIVPRGCYQLGPVLSWLKRCVISIFIVFWISFI 1433
>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +3
Query: 126 FTLIRLLVLMCSVLFYFCFFLSLVAIVLLLQVMYCIGPCALFYFIM 263
+ + L+ + +++ FC LS+ ++ LL V +G A+ +FI+
Sbjct: 257 YPTLDLIYIFSALMSVFCLLLSVASLELLHTVQEVVGMQAIKFFIV 302
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -3
Query: 634 QRIFFYCLPKAYAYLRP*AYLVVSSNRSIAESLSS-SSDVKLTKR 503
QRI Y L + YAY+ Y ++SS+ ++E L + + ++ KR
Sbjct: 331 QRILLYLLRRCYAYI----YQLLSSSEPVSEELMAVHNQLRTVKR 371
>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 7.6
Identities = 8/39 (20%), Positives = 21/39 (53%)
Frame = -2
Query: 527 IRREINETSSYYYLCNPKYTINSSIVKQGTWNTFGIIVF 411
++++ E +Y Y+C+ ++ + Q N F ++V+
Sbjct: 168 LKKKWKEEKNYAYICDQFKSLRQDLTVQRIQNEFSVLVY 206
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 530 TRQRFSYASVTTYHEVGLRPKISVCFWKAIKKNPLRE-YHSLK 655
+++ F++AS T ++ RP++S CF +K + + Y +LK
Sbjct: 194 SQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIYDTLK 236
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 458 SIVKQGTWNTFGIIVFVKRTLISKLI-CVIS 369
SIV W T G + F+ +IS++ CV S
Sbjct: 888 SIVAFTAWKTMGAVTFIATKIISRIANCVKS 918
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,816
Number of Sequences: 5004
Number of extensions: 43818
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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