Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4863
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine rece...    30   1.7  
L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal t...    27   9.2  
AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal t...    27   9.2  
AF490977-1|AAQ06435.1|  801|Caenorhabditis elegans ABC6 protein ...    27   9.2  
AF016664-9|AAB66065.2|  320|Caenorhabditis elegans Serpentine re...    27   9.2  

>U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 16 protein.
          Length = 342

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = +3

Query: 159 SVLFYFCFFLSLVAIVLLLQVMY 227
           ++L+ FCFFL+++A++LL  V +
Sbjct: 188 NILYIFCFFLAILALILLQVVRF 210


>L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical
           protein R05D3.2 protein.
          Length = 737

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = +3

Query: 99  SLSLCFLFIFTLIRLLVLMCSVLFYFCFFLSLVAIVLLLQVMYCI 233
           ++++ FLF F L+ L  ++ ++L Y   FLS+ ++ L L +  C+
Sbjct: 204 AMAISFLFAFVLLCLAEVVLTILDYPVSFLSITSVNLPL-IYSCV 247


>Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical
           protein W09D6.6 protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 123 IFTLIRLLVLMCSVLFYFCFFLSLVAIVLLLQVMYCIGPCALFYFIM 263
           I ++  +  ++C  +FYFCF         LL + +C+    LF++I+
Sbjct: 73  ILSICTIFAVICQSIFYFCFTFYFHPYTHLL-LAFCVS--KLFFWIL 116


>AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 123 IFTLIRLLVLMCSVLFYFCFFLSLVAIVLLLQVMYCIGPCALFYFIM 263
           I ++  +  ++C  +FYFCF         LL + +C+    LF++I+
Sbjct: 73  ILSICTIFAVICQSIFYFCFTFYFHPYTHLL-LAFCVS--KLFFWIL 116


>AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 123 IFTLIRLLVLMCSVLFYFCFFLSLVAIVLLLQVMYCIGPCALFYFIM 263
           I ++  +  ++C  +FYFCF         LL + +C+    LF++I+
Sbjct: 73  ILSICTIFAVICQSIFYFCFTFYFHPYTHLL-LAFCVS--KLFFWIL 116


>AF490977-1|AAQ06435.1|  801|Caenorhabditis elegans ABC6 protein
           protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 123 IFTLIRLLVLMCSVLFYFCFFLSLVAIVLLLQVMYCIGPCALFYFIM 263
           I ++  +  ++C  +FYFCF         LL + +C+    LF++I+
Sbjct: 73  ILSICTIFAVICQSIFYFCFTFYFHPYTHLL-LAFCVS--KLFFWIL 116


>AF016664-9|AAB66065.2|  320|Caenorhabditis elegans Serpentine
           receptor, class i protein71 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +3

Query: 99  SLSLCFLFIFTLIRLLV---LMCSVLFYFCFFLSLVAIVLLLQVM 224
           +L+LCF      I  ++   L+  VL YFC+FL + A V+L   M
Sbjct: 108 ALTLCFGKKHQAIAYILKIHLVHDVLLYFCYFLCIFAPVVLCASM 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,407,076
Number of Sequences: 27780
Number of extensions: 236862
Number of successful extensions: 674
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)