Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4860
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    44   2e-05
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    30   0.39 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.90 
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    26   4.8  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    26   6.4  

>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 29/109 (26%), Positives = 47/109 (43%)
 Frame = +1

Query: 100  RMLNAFIVHKGDLLQQNRLSKAEMAHLRLAAGAAMLKICEQKGVGDQFTAEQFYNLSHLM 279
            ++L   ++  G+L       K   A+LRL A    LK+C      +      +  +S L 
Sbjct: 848  KLLKVLLMADGELSPFKNTPKISRAYLRLTASKYFLKLCSIPFYAEHIDFSSYVQISLLC 907

Query: 280  VDEVPQVREAFAAKLHKGLSKGIPNKCLPLDFMGMYALAGREPDKRIRS 426
             DE   VR  F  KL K L      K LP+ +  +  L   +P++ I++
Sbjct: 908  QDENFDVRNLFLTKLQKQLQL----KKLPISYYPLLFLTAVDPEEEIKT 952


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +3

Query: 84  RAEDVPDAQRIHRAQGRSAAAKSVVESGDGAPEAGRRR--RHAQDMRTEGRRRPVHRRAV 257
           R  D  + +R +R + RS+      +  D +P   R R  RH + +R E  RRPV     
Sbjct: 29  RDRDYREYRRNYRDE-RSSRRYEDSQRRDYSPARRRDRYERHRESVREESPRRPVEHERN 87

Query: 258 LQPVSPYGR 284
            QP   +GR
Sbjct: 88  WQPELKHGR 96


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 23/100 (23%), Positives = 49/100 (49%)
 Frame = -1

Query: 323 SLAAKASLTCGTSSTIR*DRL*NCSAVNWSPTPFCSHILSMAAPAASLRCAISAFDNRFC 144
           ++++ +S +   SST+    + + S+ + SPT   S I S ++  +S   + +   ++  
Sbjct: 306 TISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSS 365

Query: 143 CSRSPLCTMNALSIRNVFCAESSSFLRPSSQRAMHLSPSS 24
            S S   + ++ +  +   + SSS  RP+S  +   S SS
Sbjct: 366 SSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSS 405


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
            subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 519  RHRALHFSADCDVPDVLPSPHHV 451
            RH  + FSA   VPD++ +PH +
Sbjct: 984  RHEDMPFSAQGIVPDIIINPHAI 1006


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 95  VFCAESSSFLRPSSQRAMHLSPSSLQR 15
           +F  +++SF RP +  + HLS SSL +
Sbjct: 123 LFAEDNASFHRPFTDVSAHLSSSSLSK 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,942
Number of Sequences: 5004
Number of extensions: 47114
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)