Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4860
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    49   3e-06
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    49   3e-06
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U41296-1|AAA93297.1|  579|Caenorhabditis elegans Steroid hormone...    29   4.5  
AY204170-1|AAO39174.1|  579|Caenorhabditis elegans nuclear recep...    29   4.5  
AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical ...    29   4.5  
AF067936-1|AAC19212.2|  579|Caenorhabditis elegans Nuclear hormo...    29   4.5  
AC024869-2|AAK68603.2|  542|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z68105-3|CAA92121.2|  442|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
            protein H38K22.1 protein.
          Length = 1570

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 35/109 (32%), Positives = 53/109 (48%)
 Frame = +1

Query: 67   KKDELSAQKTFRMLNAFIVHKGDLLQQNRLSKAEMAHLRLAAGAAMLKICEQKGVGDQFT 246
            ++ E +AQ    +L+  I  KGDL    +    E A LR  A   +LK+        +  
Sbjct: 935  RRMEKAAQNFIDLLSEIIEKKGDL--GGKQCDLEQARLRATASGCLLKLASVITYRTKLN 992

Query: 247  AEQFYNLSHLMVDEVPQVREAFAAKLHKGLSKGIPNKCLPLDFMGMYAL 393
               F N+S+++ DE   VR  +A  + KGLSK   N+ LP++F   Y L
Sbjct: 993  THIFKNMSYIITDEAYCVRLYYALHVKKGLSK---NR-LPIEFAACYGL 1037


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
            protein H38K22.1 protein.
          Length = 1570

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 35/109 (32%), Positives = 53/109 (48%)
 Frame = +1

Query: 67   KKDELSAQKTFRMLNAFIVHKGDLLQQNRLSKAEMAHLRLAAGAAMLKICEQKGVGDQFT 246
            ++ E +AQ    +L+  I  KGDL    +    E A LR  A   +LK+        +  
Sbjct: 935  RRMEKAAQNFIDLLSEIIEKKGDL--GGKQCDLEQARLRATASGCLLKLASVITYRTKLN 992

Query: 247  AEQFYNLSHLMVDEVPQVREAFAAKLHKGLSKGIPNKCLPLDFMGMYAL 393
               F N+S+++ DE   VR  +A  + KGLSK   N+ LP++F   Y L
Sbjct: 993  THIFKNMSYIITDEAYCVRLYYALHVKKGLSK---NR-LPIEFAACYGL 1037


>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
            F30H5.3 protein.
          Length = 1599

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/77 (29%), Positives = 31/77 (40%)
 Frame = -1

Query: 254  CSAVNWSPTPFCSHILSMAAPAASLRCAISAFDNRFCCSRSPLCTMNALSIRNVFCAESS 75
            C A N    P        AA      C I+   +   C  + LC  NA+  R   CA  +
Sbjct: 878  CGATNMDVCPEGEKAYVNAADMGVRECLINVEGS---CPSNYLCRFNAMKNRYYCCASIT 934

Query: 74   SFLRPSSQRAMHLSPSS 24
              L PS  +A++  PSS
Sbjct: 935  GDLCPSG-KALYKEPSS 950


>U41296-1|AAA93297.1|  579|Caenorhabditis elegans Steroid hormone
           receptor-like proteinprotein.
          Length = 579

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 149 FCCSRSPLCTMNALSIRNVFCAESSSFLRPSSQRA 45
           FC  R   C +N  S++ V   ES +F  PS+  +
Sbjct: 394 FCVGRPSSCNLNERSMKTVSMLESRNFQSPSANNS 428


>AY204170-1|AAO39174.1|  579|Caenorhabditis elegans nuclear receptor
           NHR-47 protein.
          Length = 579

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 149 FCCSRSPLCTMNALSIRNVFCAESSSFLRPSSQRA 45
           FC  R   C +N  S++ V   ES +F  PS+  +
Sbjct: 394 FCVGRPSSCNLNERSMKTVSMLESRNFQSPSANNS 428


>AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical
           protein F54C4.3 protein.
          Length = 1145

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 342 GHTEQMSAVRLHGHVRVGRQRARQAHTERHPAVHDGRRGEETGVRQEHH 488
           GH +     ++H ++R+  +  +Q   E+    H   + EE G  Q+HH
Sbjct: 829 GHYDLEEEHKMHHNMRLEEEELQQHLHEQQKPEHLSHQTEELGELQDHH 877


>AF067936-1|AAC19212.2|  579|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 47 protein.
          Length = 579

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 149 FCCSRSPLCTMNALSIRNVFCAESSSFLRPSSQRA 45
           FC  R   C +N  S++ V   ES +F  PS+  +
Sbjct: 394 FCVGRPSSCNLNERSMKTVSMLESRNFQSPSANNS 428


>AC024869-2|AAK68603.2|  542|Caenorhabditis elegans Hypothetical
           protein Y75B7AL.1 protein.
          Length = 542

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -1

Query: 215 HILSMAAPAASLRCAISAFDNRFCCSRSPLCTMNALSIRNVFCAESS-SFLRPSSQRAMH 39
           H LS  A  AS+ C ++    RF  +R P  T     I   F  E   SF+  ++ R + 
Sbjct: 123 HALSHVANTASIWCVVAITIQRFMATRDPFRTSRTTVIVQSFRTERRISFIYCATYRRLF 182

Query: 38  LSP 30
             P
Sbjct: 183 KMP 185


>Z68105-3|CAA92121.2|  442|Caenorhabditis elegans Hypothetical
           protein F13E6.4 protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 345 HTEQMSAVRLHGHVRVGRQRARQAHTERHPAVH 443
           HT Q+SA  LH  V  G+  A   H   H   H
Sbjct: 99  HTRQVSAPNLHTSVNNGQSSATVPHPSHHNVHH 131


>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
            protein Y108G3AL.7 protein.
          Length = 1192

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +3

Query: 87   AEDVPDAQRIHRAQGRSAAAKSVVESGDGAPEAGRRRRHAQDMRTEGRRRPVHRRAVLQP 266
            +ED    QR   +   +     + +  D  PEA  R+++ +  +T GRR    RR    P
Sbjct: 865  SEDRFSFQRPQDSDDVTDVPDDMTDHEDLLPEAATRKKYERKSQTPGRRSLSSRRDDTTP 924

Query: 267  VS 272
            VS
Sbjct: 925  VS 926


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,079,845
Number of Sequences: 27780
Number of extensions: 286599
Number of successful extensions: 903
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)