Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4859
         (824 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical p...    28   9.3  
Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical p...    28   9.3  
AC006804-4|ABO16464.1|  369|Caenorhabditis elegans Hypothetical ...    28   9.3  
AC006804-3|AAF60757.2|  388|Caenorhabditis elegans Hypothetical ...    28   9.3  

>Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical
            protein R06F6.8a protein.
          Length = 1468

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 286  CYLFHSSKLINLAKTHRRQSVLYPTVGSHVPSSSLQRLLDISIVLQTVS**FSINGSNDN 465
            C+L     L  L + H + S  YP +GS       ++L +I +   T S    +N S DN
Sbjct: 1120 CFLIEDFALA-LTRLHAQFSWPYPLIGSQFVHQIEKKLGNIRVSQSTASLNGLLNDSLDN 1178

Query: 466  LNK 474
            + K
Sbjct: 1179 IKK 1181


>Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical
            protein R06F6.8b protein.
          Length = 1470

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 286  CYLFHSSKLINLAKTHRRQSVLYPTVGSHVPSSSLQRLLDISIVLQTVS**FSINGSNDN 465
            C+L     L  L + H + S  YP +GS       ++L +I +   T S    +N S DN
Sbjct: 1122 CFLIEDFALA-LTRLHAQFSWPYPLIGSQFVHQIEKKLGNIRVSQSTASLNGLLNDSLDN 1180

Query: 466  LNK 474
            + K
Sbjct: 1181 IKK 1183


>AC006804-4|ABO16464.1|  369|Caenorhabditis elegans Hypothetical
           protein Y53G8B.4b protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 677 DIFNISHLCNIYSLFFTSYII 739
           DIFN S +  IY +FFT+++I
Sbjct: 260 DIFNTSMVTPIYYVFFTTFVI 280


>AC006804-3|AAF60757.2|  388|Caenorhabditis elegans Hypothetical
           protein Y53G8B.4 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 677 DIFNISHLCNIYSLFFTSYII 739
           DIFN S +  IY +FFT+++I
Sbjct: 279 DIFNTSMVTPIYYVFFTTFVI 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,947,028
Number of Sequences: 27780
Number of extensions: 268136
Number of successful extensions: 552
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)