Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4858
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    28   1.3  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    27   2.9  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   2.9  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    26   5.1  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   5.1  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   8.9  

>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 207 NHHHRETDDNKNHREANYYHNESTPWHH 290
           NHH+    D   H E +++H+     HH
Sbjct: 283 NHHNNHESDKDLHHEGHHHHHHHHHHHH 310


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +1

Query: 52  GEENPLIKLLHKHMSTYTVPPARTGHATPTPEWARPPST 168
           G  NPL  L     + + +P        P PE   PPST
Sbjct: 103 GANNPLANLTSARYAGFNIPMPSASMFGPNPENPVPPST 141


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 492 VKFHVEDCPRLTRELNSLAVHTSPILATLFLVWYVVVLRVTHIRIVDFV 346
           V+FH E    +   L  LAV  + IL T+ L W + + RV     + FV
Sbjct: 612 VEFHKESKALIFNTLKILAVENTAILETVILSW-ISLSRVVEEEELHFV 659


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 94  STYTVPPARTGHATPTPEWARPPSTPSDPSEGDP 195
           S  + P AR     P P   +PPSTP+      P
Sbjct: 21  SLKSTPKARETTEPPPPSSQQPPSTPNGKEAASP 54


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 207 NHHHRETDDNKNHREANYYHNESTPWHH*R-RL*HQRETGSRGTTHGKRSRQ 359
           N   RET+ ++ HR  +  H ES    H R      RE G R + H + S++
Sbjct: 16  NETDRETNHSRRHRHHHSRHRESKHGRHDRSERPSSREAGDR-SRHERFSKE 66


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 364 DVCNSED-DYVPDKKECSKYWRCVNGEGVQFSCQPGTIFNVKLNVC-DWPEN 513
           ++ N +D ++  D+K+C      V  EG+    + GT  + +  VC D+ EN
Sbjct: 798 NIKNKDDVNFSEDRKKCCALCGIVGTEGLLVCFKCGTCVHERCYVCDDYAEN 849


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,727
Number of Sequences: 5004
Number of extensions: 55048
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)