Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4858
(761 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 56 4e-08
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 40 0.003
AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical ... 38 0.006
U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase prote... 38 0.010
U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical pr... 37 0.014
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 33 0.29
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 33 0.29
Z82286-2|CAB05306.1| 397|Caenorhabditis elegans Hypothetical pr... 31 0.89
U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z93393-17|CAB07693.2| 751|Caenorhabditis elegans Hypothetical p... 30 1.6
AL132863-1|CAB60573.1| 477|Caenorhabditis elegans Hypothetical ... 29 2.7
Z66524-7|CAA91419.2| 626|Caenorhabditis elegans Hypothetical pr... 25 3.2
U53342-5|AAA96217.1| 178|Caenorhabditis elegans Hypothetical pr... 29 3.6
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 4.8
Z32840-1|CAA83679.1| 584|Caenorhabditis elegans Hypothetical pr... 28 6.3
U80840-9|AAB37924.1| 289|Caenorhabditis elegans Hypothetical pr... 28 6.3
DQ340623-1|ABC65811.1| 584|Caenorhabditis elegans chondroitin p... 28 6.3
AC006635-1|AAY86194.1| 201|Caenorhabditis elegans Hypothetical ... 28 6.3
Z82285-8|CAB05297.2| 393|Caenorhabditis elegans Hypothetical pr... 28 8.3
U56963-2|AAB38119.2| 326|Caenorhabditis elegans Neuropeptide-li... 28 8.3
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 8.3
AF039719-12|AAB96758.1| 293|Caenorhabditis elegans Hypothetical... 28 8.3
AF022976-16|AAC69076.2| 276|Caenorhabditis elegans Nuclear horm... 28 8.3
AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical ... 28 8.3
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
H02I12.1 protein.
Length = 1319
Score = 55.6 bits (128), Expect = 4e-08
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +1
Query: 370 CNSEDDYVPDKKECSKYWRCVNGEGVQFSCQPGTIFNVKLNVCDWPENTDRPECS 534
C+ ++ D C ++RCV G V +C GT+FN L+VCDWP P CS
Sbjct: 1245 CSEHGSFIADANNCEVFYRCVWGRKVVMTCPSGTVFNPLLSVCDWPSAV--PSCS 1297
Score = 35.5 bits (78), Expect = 0.041
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 418 YWRCVNGEGVQFSCQPGTIFNVKLNVCDWPENTDRP 525
++ C N Q C PGT+FN+ CD+ TD P
Sbjct: 209 FYSCSNNMVFQRYCPPGTVFNINQQSCDFQCTTDDP 244
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 379 EDDYVPDKKECSKYWRCVNGEGVQF-SCQPGTIFNVKLNVCDWPE 510
ED ++++CS +C GE + SCQ FN CD+P+
Sbjct: 1186 EDGLYRNERDCSAILQCFGGELFEHPSCQSSLAFNQLTGKCDYPQ 1230
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +1
Query: 382 DDYVPDKKECSKY-WRCVNGEGVQFSCQPGTIFNVKLNVCDWPENT-DRPE 528
D + D +CS Y W+C NG+ + +C I+ + N+CD+PE+ D PE
Sbjct: 208 DMHFTDNVKCSPYFWQCSNGKLFRKTCPEKLIYVLDQNLCDFPESVKDCPE 258
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 370 CNSEDDYVPDKKECSK-YWRCVNGEGVQFSCQPGTIFNVKLNVCDWPENTD 519
C+ D + CS+ Y +C+ G + SC PG +N K +C + D
Sbjct: 889 CSGRPDGIYALPYCSQDYVQCMQGRSLISSCAPGLFYNEKNGMCAYKHTVD 939
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 400 KKECSK-YWRCVNGEGVQFSCQPGTIFNVKLNVCDWPENTDR 522
K+ C+K ++ C +G C +FN CD+ EN ++
Sbjct: 443 KEACTKSFFTCHDGRAFANDCPGDLVFNKATGTCDFAENCEK 484
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 412 SKYWRCVNGEGVQFSCQPGTIFNVKLNVCDWPEN 513
S ++ C NG+ V +C IFN + CD+ N
Sbjct: 589 SVFYICANGQVVATTCPANLIFNPYVGECDYSTN 622
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 385 DYVPDKKECSK-YWRCVNGEGVQFSCQPGTIFNVKLNVCDWPEN 513
DY DK C++ Y++C NG C ++ L CD+ N
Sbjct: 119 DYALDKTVCNENYYQCANGISYMRKCPYQQVYVPILKRCDYHTN 162
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 406 ECSKYW-RCVNGEGVQFSCQPGTIFNVKLNVCDWPENTD 519
+C KY +C N + +F C G ++ + CD EN +
Sbjct: 700 DCEKYLIKCYNRKTFKFPCPSGLYYSRLQDKCDVKENVE 738
>AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical
protein W03F11.1 protein.
Length = 235
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 382 DDYVPDKKECSKYWRCVNGEGVQFSCQPGTIFNVKLNVCDWPENTDRP 525
D Y PD C +++C +G Q SC GTI++ CD RP
Sbjct: 163 DGYKPDVYNCKNFYQCASGLWTQRSCGEGTIWDQHKLTCDHNRGQCRP 210
>U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase protein
1 protein.
Length = 617
Score = 37.5 bits (83), Expect = 0.010
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 376 SEDDYVPDKKECSKYWRCVNGEGVQFSCQPGTIFNVKLNVCDWPE 510
++D + +C K+ RCVNG F C G F+ +CD P+
Sbjct: 567 TKDGFFGVPSDCLKFIRCVNGISYNFECPNGLSFHADTMMCDRPD 611
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Frame = +1
Query: 4 GAMTWAIDMDDFKGLCGEEN----PLIKLLHKHMSTYTVPPARTGHATPTPEWARPPSTP 171
GA W +D DDF C N PLI ++ K + +P + G T P T
Sbjct: 390 GAFVWTLDFDDFNAGCSNSNGQLYPLISVIAKELGGVIIP--KKGGVTTAPTTVATTVTT 447
Query: 172 SDP 180
P
Sbjct: 448 GRP 450
>U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical
protein R02F2.4 protein.
Length = 431
Score = 37.1 bits (82), Expect = 0.014
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 379 EDDYVPDKKECSK-YWRCVNGEGVQFSCQPGTIFNVKLNVCDWPEN 513
E D K ECS ++ C G + +C +FN ++ CDWP+N
Sbjct: 180 ESDGNISKSECSNVFFSCSEGIAHRRNCPANLVFNPAISSCDWPKN 225
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 370 CNSEDDYVPDKKECSKYWRCVNGEGVQFSCQPGTIFNVKLNVCDWPENTDRPEC 531
C D Y + S + C NG + C G +F+ K +CD+ N D EC
Sbjct: 239 CGEVDGYFSFGRCSSSFSACTNGIPIVMFCPDGLMFSEKNQMCDYEWNVD--EC 290
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 427 CVNGEGVQFSCQPGTIFNVKLNVCDWPENT 516
C NG F C P +FN +CD+PE +
Sbjct: 329 CQNGRENIFECPPSLVFNENSLICDYPETS 358
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +1
Query: 415 KYWRCVNGEGVQFSCQPGTIFNVKLNVCDWPEN 513
++ CV+GE C +++ L CDW N
Sbjct: 41 RFLACVSGEARYMDCPEDLVYHKNLEFCDWRHN 73
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 32.7 bits (71), Expect = 0.29
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +1
Query: 370 CNSEDDYVPDKKECS-KYWRCVNGEGVQFSCQPGTIFNVKLNVCDWPENTDRPECS 534
C + D + CS + C G C +FN + VCDWP D EC+
Sbjct: 247 CEGKADGIHPNGVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPR--DVAECA 300
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +1
Query: 379 EDDYVPDKKECSKYWRCVNGEGVQFSCQPGTIFNVKLNVCDWPENTDRPEC 531
ED Y + S + C NG + C G F+ CD+ N EC
Sbjct: 311 EDGYFSFGQCSSSFTACTNGRAIVMFCPAGLKFSESTVRCDYESNVS--EC 359
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 427 CVNGEGVQFSCQPGTIFNVKLNVCDWPENT 516
C NG F C +FN + +CD+P+ +
Sbjct: 422 CQNGHVDIFECPSSLVFNDQSLICDYPQTS 451
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 32.7 bits (71), Expect = 0.29
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +1
Query: 370 CNSEDDYVPDKKECS-KYWRCVNGEGVQFSCQPGTIFNVKLNVCDWPENTDRPECS 534
C + D + CS + C G C +FN + VCDWP D EC+
Sbjct: 247 CEGKADGIHPNGVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPR--DVAECA 300
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +1
Query: 379 EDDYVPDKKECSKYWRCVNGEGVQFSCQPGTIFNVKLNVCDWPENTDRPEC 531
ED Y + S + C NG + C G F+ CD+ N EC
Sbjct: 311 EDGYFSFGQCSSSFTACTNGRAIVMFCPAGLKFSESTVRCDYESNVS--EC 359
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 427 CVNGEGVQFSCQPGTIFNVKLNVCDWPENT 516
C NG F C +FN + +CD+P+ +
Sbjct: 422 CQNGHVDIFECPSSLVFNDQSLICDYPQTS 451
>Z82286-2|CAB05306.1| 397|Caenorhabditis elegans Hypothetical
protein W02A2.3 protein.
Length = 397
Score = 31.1 bits (67), Expect = 0.89
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 436 GEGVQFSCQPGTIFNVKLNVCDWPENT 516
G + C PGT+F+V+ VC W N+
Sbjct: 303 GRWQRMPCAPGTVFDVQSQVCVWDTNS 329
>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical protein
F46H5.4 protein.
Length = 2018
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/81 (30%), Positives = 40/81 (49%)
Frame = -3
Query: 642 EVYCQIKKITTFFDQSEFRFIPLYLE*FN**RS*TL*TFRSVCIFRPIANVKFHVEDCPR 463
E+ Q KK T ++ F +I L+ N RSV F PI + +ED +
Sbjct: 1846 ELAAQYKKRTILTVENSFPYIKTRLQVVN----------RSVKDFSPI---EVAIEDIEK 1892
Query: 462 LTRELNSLAVHTSPILATLFL 400
TREL++ A H +P + ++F+
Sbjct: 1893 KTRELSAAAQHKNPKMLSMFI 1913
>Z93393-17|CAB07693.2| 751|Caenorhabditis elegans Hypothetical
protein Y48E1B.7 protein.
Length = 751
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +3
Query: 126 TRNSYSGMGASTFNSIRPI*G*SDSYHNHHHRETDDNKNHREANYYHNE 272
TR + S GA+ + I + + YH+HHH + + E Y+ +
Sbjct: 638 TRQAASAPGAAAGDEIDVVGIDEEDYHHHHHMDLHEVVEEEEVGYHQED 686
>AL132863-1|CAB60573.1| 477|Caenorhabditis elegans Hypothetical
protein Y37H2A.1 protein.
Length = 477
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 52 GEENPLIKLLHKHMSTYTVPPARTGHATPTPEWARPPSTPSD 177
G + P + H+H V R G A PT +RPP P D
Sbjct: 64 GRQGPAV---HQHHQMVQVHTRRLGGAAPTMHHSRPPPPPLD 102
>Z66524-7|CAA91419.2| 626|Caenorhabditis elegans Hypothetical
protein T13H5.3 protein.
Length = 626
Score = 24.6 bits (51), Expect(2) = 3.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 4 GAMTWAIDMDDFKG 45
G M WAID DD +G
Sbjct: 367 GVMIWAIDFDDDQG 380
Score = 23.0 bits (47), Expect(2) = 3.2
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +1
Query: 25 DMDDFKGLCGEENPLI 72
D ++ G+CG+ +PLI
Sbjct: 416 DNEELAGMCGKSSPLI 431
>U53342-5|AAA96217.1| 178|Caenorhabditis elegans Hypothetical
protein F01G12.1 protein.
Length = 178
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = +3
Query: 192 SDSYHNHHHRETDDNKNHREANYYHNESTPWHH 290
+ S H+HH +++K+H ++ H+ W H
Sbjct: 91 NQSGHDHHIHNNEEHKHHNMRSHDHHTMKMWFH 123
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/48 (29%), Positives = 18/48 (37%)
Frame = +3
Query: 201 YHNHHHRETDDNKNHREANYYHNESTPWHH*RRL*HQRETGSRGTTHG 344
+H HH + +H E +H HH H G GT HG
Sbjct: 505 HHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPA--HHGHHGEHGTHHG 550
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/80 (25%), Positives = 30/80 (37%)
Frame = +3
Query: 102 HSPACAHWTRNSYSGMGASTFNSIRPI*G*SDSYHNHHHRETDDNKNHREANYYHNESTP 281
H A + + +S S +S+ +S + +H H E D +H H+E
Sbjct: 335 HKKAASSSSSSSSSSSSSSSSSSSESEDEKKHAPAHHEHHEHKDGAHHEHKEGEHHEHAA 394
Query: 282 WHH*RRL*HQRETGSRGTTH 341
HH H R G TH
Sbjct: 395 -HHDEHGVHHRHHGEHHGTH 413
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Frame = +3
Query: 201 YHNHHHRETDDNKNHREANYYHNESTPWHH*RR-----L*HQRETGSRGTTHG 344
+H HH +++H +H+ S HH L H G GT HG
Sbjct: 626 HHGAHHHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHG 678
>Z32840-1|CAA83679.1| 584|Caenorhabditis elegans Hypothetical
protein C07G2.1a protein.
Length = 584
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 406 ECSK-YWRCVNGEGVQFSCQPGTIFNVKLNVCDWPENTDRPECS*G 540
ECS Y C NG + C F+ +CD+ N PEC+ G
Sbjct: 226 ECSDHYTACSNGYLIPMQCPARLAFDEARVICDYVMNV--PECTNG 269
>U80840-9|AAB37924.1| 289|Caenorhabditis elegans Hypothetical
protein F08D12.3a protein.
Length = 289
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +1
Query: 361 ADVCNSEDDYVPDKKECSKYWRCVNGEGVQFSCQPGTIFNVKLNVCDWPE 510
+D C ++D Y P C K V V +C GT K +VC W E
Sbjct: 238 SDCCEAKDVYDPSTATCQKN-EDVGPAAVDGACPAGTSL-TKGSVCCWNE 285
>DQ340623-1|ABC65811.1| 584|Caenorhabditis elegans chondroitin
proteoglycan-1 protein.
Length = 584
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 406 ECSK-YWRCVNGEGVQFSCQPGTIFNVKLNVCDWPENTDRPECS*G 540
ECS Y C NG + C F+ +CD+ N PEC+ G
Sbjct: 226 ECSDHYTACSNGYLIPMQCPARLAFDEARVICDYVMNV--PECTNG 269
>AC006635-1|AAY86194.1| 201|Caenorhabditis elegans Hypothetical
protein F38G1.3 protein.
Length = 201
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/63 (22%), Positives = 26/63 (41%)
Frame = +3
Query: 87 AYEHLHSPACAHWTRNSYSGMGASTFNSIRPI*G*SDSYHNHHHRETDDNKNHREANYYH 266
A+EH+ C + S +T I P +H+HHH+E + + + +
Sbjct: 105 AFEHIQKCECDVCRSPTTSTSTTTTTTQITPSMHRKKHHHHHHHKENSSHYHKHDQLVFP 164
Query: 267 NES 275
N +
Sbjct: 165 NNT 167
>Z82285-8|CAB05297.2| 393|Caenorhabditis elegans Hypothetical
protein T28F3.3 protein.
Length = 393
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 198 SYHNHHHRETDDNKNHREANYYHNES 275
S H+H H D N +H+E ++ H+ S
Sbjct: 140 SPHDHSHDHHDHNHSHKEHDHSHDHS 165
>U56963-2|AAB38119.2| 326|Caenorhabditis elegans Neuropeptide-like
protein protein16 protein.
Length = 326
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 192 SDSYHNHHHRETDDNKNHREAN 257
SDS+H H R D++ H++ N
Sbjct: 151 SDSHHGHQKRSVDEHHGHQKKN 172
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +1
Query: 109 PPARTGHATPTPEWARPPSTPSDPSEGDP 195
PP R TP RPP TP P +P
Sbjct: 155 PPPRRPPMTPPSPQRRPPRTPPSPEPRNP 183
>AF039719-12|AAB96758.1| 293|Caenorhabditis elegans Hypothetical
protein K04F10.7 protein.
Length = 293
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 204 HNHHHRETDDNKNHREANYYH 266
H HHR DD +HR++N+ H
Sbjct: 150 HKDHHRR-DDKHHHRDSNHRH 169
>AF022976-16|AAC69076.2| 276|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 132 protein.
Length = 276
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 400 KKECSKYWRCVNGEGVQFSCQP 465
+K C K +C NGEG Q+ C+P
Sbjct: 43 QKNCQKPSKCKNGEG-QYHCKP 63
>AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical
protein Y119D3B.12a protein.
Length = 339
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +3
Query: 192 SDSYHNHHHRETDDNKNHREANY--YHNESTPWHH*RRL*HQRETGSRGTTHGKRS 353
S H+H HR + D+++HR ++ H E RR R S + +RS
Sbjct: 277 STEQHHHSHRSSRDHRDHRHRDHRGEHREHREHKEHRRDDRHRSERSERSERSERS 332
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,599,513
Number of Sequences: 27780
Number of extensions: 316267
Number of successful extensions: 1236
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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