Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4857
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    27   2.1  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    27   3.6  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    26   4.8  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 698 GNGVVFTPARDLGLGDSGRAPPKFYEVFIHSTSTPTLGPVVAL 570
           G  +VF P   LGL    R  P + E F+      ++G V+++
Sbjct: 426 GVNIVFGPQHFLGLNGMPRRIPDYPEAFVGWNFVSSIGSVISI 468


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -3

Query: 418 RKKYEDLLLSQIIQGKYLRNENEYRVIIVFFFYMKCSELFKT 293
           RK++  L+LS+ +    + N+N   +I+  + Y K +E F+T
Sbjct: 575 RKRHRPLILSEFVGSASILNDN--AIIVNPWDYSKTAEAFRT 614


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 122 IDSCYSIVYVLNTKLV*FIVRSLREVSSIVPSLLS*RDGFH*Y-VNMS 262
           I +C+  +  L+TKL   ++ S   V S+  SL + RD +H Y +N+S
Sbjct: 84  ICTCFKTLNQLHTKLYQQMISSGSPVYSLSQSLPAFRDVYHMYTINLS 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,659
Number of Sequences: 5004
Number of extensions: 56080
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)