Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4856
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0550 - 4825807-4826214                                           30   1.8  
12_01_1113 - 11888691-11888900,11891794-11892243,11892274-118929...    30   2.4  
05_04_0367 - 20672776-20673550,20674097-20674320,20674626-206748...    30   2.4  
08_01_0562 + 4981172-4981579                                           29   3.1  
01_06_0655 - 30916396-30916578,30916689-30916748,30916916-309170...    29   3.1  
02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300     29   5.4  
03_05_0957 + 29195549-29196706,29198590-29198868                       28   9.5  

>08_01_0550 - 4825807-4826214
          Length = 135

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +1

Query: 523 AVMRFGLKGGTAFVTIPTETLEFLSSRGVAHLRCRCLWAPVSA*HQGGC 669
           A++R  + GG  F  +  +  E L  RG+A L CR  W PV A     C
Sbjct: 61  ALVRGTIGGGWFFGAMQVKACETL--RGMASLSCRVAWWPVDAVADSPC 107


>12_01_1113 -
           11888691-11888900,11891794-11892243,11892274-11892950,
           11893396-11893957,11894121-11894207
          Length = 661

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -3

Query: 153 FFCQQTKLIMNHMTDSSFIIIFRTCFFFKH*LIVKYCL---RSPLIRHAI 13
           F C +     +  +D  F + F+ CF + H    +YCL   RSPL+R  +
Sbjct: 179 FKCSKCLATGHSRSDCHFRVCFKACFAYGH--KARYCLAQIRSPLVRDTL 226


>05_04_0367 -
           20672776-20673550,20674097-20674320,20674626-20674843,
           20675133-20676534
          Length = 872

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 298 VIFCHRSRFFAVLETKDRSSIVKSNQNR 215
           ++ CHR +F A+LETK    I K+   R
Sbjct: 623 ILECHRKQFHAILETKSHVLIPKNGPER 650


>08_01_0562 + 4981172-4981579
          Length = 135

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +1

Query: 523 AVMRFGLKGGTAFVTIPTETLEFLSSRGVAHLRCRCLWAPVSA*HQGGC 669
           A++R  + GG  F     +  E L  RG+A L CR  W PV A     C
Sbjct: 61  ALVRGTIGGGWFFGATQVKACETL--RGMASLSCRVAWWPVDAVADSPC 107


>01_06_0655 -
           30916396-30916578,30916689-30916748,30916916-30917032,
           30917139-30917246,30917301-30917390,30917731-30917799,
           30918086-30918178,30918292-30918384,30918540-30918621,
           30919467-30919534,30919662-30920684
          Length = 661

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +1

Query: 490 RYHRSAYFCREAVMRFGLKGGTAFVTIPTETLEFLSSRGVAHL 618
           R  R+  FC      +GL G T +V    E  E LSSR VA+L
Sbjct: 405 RPRRTIIFCSWDAEEYGLTGSTEWV---EENREMLSSRAVAYL 444


>02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300
          Length = 623

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 683 GWTSSQPPWC*ADTGAHRHLQRKCATPLEDRNSKVSVGIVTKAVPPFK 540
           GW +   PW  A   A+ HL+R C   +   N    + ++ K+ P FK
Sbjct: 132 GWGAYVSPWVAALGPAYPHLERICLKRMTVSND--DLALIAKSFPLFK 177


>03_05_0957 + 29195549-29196706,29198590-29198868
          Length = 478

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 211 FPDSDLILRLNFDLLSQGQQKTDSGDKK*PLISL 312
           FP++DL+LRL+ D         D+G+   P + L
Sbjct: 40  FPNADLVLRLHLDPCPDDDADLDAGEDHRPSLDL 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,742,912
Number of Sequences: 37544
Number of extensions: 404393
Number of successful extensions: 758
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)