Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4856
(770 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81078-6|CAB03079.2| 1074|Caenorhabditis elegans Hypothetical pr... 29 3.7
AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical ... 29 3.7
AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical ... 29 3.7
AL021466-2|CAA16284.2| 1074|Caenorhabditis elegans Hypothetical ... 29 3.7
U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical pr... 29 4.8
S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein. 29 4.8
S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein. 29 4.8
AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated... 29 4.8
AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated... 29 4.8
>Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical
protein F36H2.1c protein.
Length = 1071
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 64 MFKKKTCPENNNKARIGHMVHNQFGLLTKKKYHFKRSHI 180
+ + T PE RI ++ ++ G LTK + HFK+ H+
Sbjct: 420 VIRSSTIPEE--LGRISFLLSDKTGTLTKNEMHFKKIHL 456
>Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical
protein F36H2.1b protein.
Length = 1035
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 64 MFKKKTCPENNNKARIGHMVHNQFGLLTKKKYHFKRSHI 180
+ + T PE RI ++ ++ G LTK + HFK+ H+
Sbjct: 384 VIRSSTIPEE--LGRISFLLSDKTGTLTKNEMHFKKIHL 420
>Z81078-6|CAB03079.2| 1074|Caenorhabditis elegans Hypothetical
protein F36H2.1a protein.
Length = 1074
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 64 MFKKKTCPENNNKARIGHMVHNQFGLLTKKKYHFKRSHI 180
+ + T PE RI ++ ++ G LTK + HFK+ H+
Sbjct: 423 VIRSSTIPEE--LGRISFLLSDKTGTLTKNEMHFKKIHL 459
>AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical
protein F36H2.1c protein.
Length = 1071
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 64 MFKKKTCPENNNKARIGHMVHNQFGLLTKKKYHFKRSHI 180
+ + T PE RI ++ ++ G LTK + HFK+ H+
Sbjct: 420 VIRSSTIPEE--LGRISFLLSDKTGTLTKNEMHFKKIHL 456
>AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical
protein F36H2.1b protein.
Length = 1035
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 64 MFKKKTCPENNNKARIGHMVHNQFGLLTKKKYHFKRSHI 180
+ + T PE RI ++ ++ G LTK + HFK+ H+
Sbjct: 384 VIRSSTIPEE--LGRISFLLSDKTGTLTKNEMHFKKIHL 420
>AL021466-2|CAA16284.2| 1074|Caenorhabditis elegans Hypothetical
protein F36H2.1a protein.
Length = 1074
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 64 MFKKKTCPENNNKARIGHMVHNQFGLLTKKKYHFKRSHI 180
+ + T PE RI ++ ++ G LTK + HFK+ H+
Sbjct: 423 VIRSSTIPEE--LGRISFLLSDKTGTLTKNEMHFKKIHL 459
>U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical
protein F02C9.3 protein.
Length = 1064
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 70 KKKTCPENNNKARIGHMVHNQFGLLTKKKYHFKRSHI 180
+ T PE RI ++ ++ G LTK + HFK+ H+
Sbjct: 415 RSSTIPEE--LGRISFLLSDKTGTLTKNEMHFKKIHL 449
>S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein.
Length = 919
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 695 CCLDGWTSSQPPWC*ADTGAHRHLQRKCATP 603
C LDG SS W + HR+ R C P
Sbjct: 271 CKLDGGWSSWSDWSACSSSCHRYRTRACTVP 301
>S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein.
Length = 947
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 695 CCLDGWTSSQPPWC*ADTGAHRHLQRKCATP 603
C LDG SS W + HR+ R C P
Sbjct: 299 CKLDGGWSSWSDWSACSSSCHRYRTRACTVP 329
>AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated
protein 5, isoform b protein.
Length = 567
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 695 CCLDGWTSSQPPWC*ADTGAHRHLQRKCATP 603
C LDG SS W + HR+ R C P
Sbjct: 271 CKLDGGWSSWSDWSACSSSCHRYRTRACTVP 301
>AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated
protein 5, isoform a protein.
Length = 919
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 695 CCLDGWTSSQPPWC*ADTGAHRHLQRKCATP 603
C LDG SS W + HR+ R C P
Sbjct: 271 CKLDGGWSSWSDWSACSSSCHRYRTRACTVP 301
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,427,895
Number of Sequences: 27780
Number of extensions: 365507
Number of successful extensions: 783
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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