Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4850
(424 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY305829-1|AAR11974.1| 281|Caenorhabditis elegans nuclear recep... 28 3.2
AF273803-1|AAG15152.1| 433|Caenorhabditis elegans nuclear recep... 28 3.2
AF016438-6|AAZ32805.1| 284|Caenorhabditis elegans Nuclear hormo... 28 3.2
AF016438-5|AAB65893.2| 408|Caenorhabditis elegans Nuclear hormo... 28 3.2
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein. 27 5.5
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical... 27 5.5
Z92796-4|CAB63231.1| 516|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical pr... 27 7.3
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 27 7.3
U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protei... 27 7.3
U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protei... 27 7.3
U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protei... 27 7.3
AC087232-2|AAK09076.4| 401|Caenorhabditis elegans Hypothetical ... 27 7.3
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr... 26 9.7
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 26 9.7
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 26 9.7
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 26 9.7
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 26 9.7
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 26 9.7
>AY305829-1|AAR11974.1| 281|Caenorhabditis elegans nuclear receptor
NHR-56 protein.
Length = 281
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 417 CRSRAPAWCRCSSNGETCCPMGAC 346
CR+ A + R + +GET CP+G C
Sbjct: 24 CRACAAFFRRTNVDGETFCPIGNC 47
>AF273803-1|AAG15152.1| 433|Caenorhabditis elegans nuclear receptor
NHR-56 protein.
Length = 433
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 417 CRSRAPAWCRCSSNGETCCPMGAC 346
CR+ A + R + +GET CP+G C
Sbjct: 52 CRACAAFFRRTNVDGETFCPIGNC 75
>AF016438-6|AAZ32805.1| 284|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 56, isoform b protein.
Length = 284
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 417 CRSRAPAWCRCSSNGETCCPMGAC 346
CR+ A + R + +GET CP+G C
Sbjct: 27 CRACAAFFRRTNVDGETFCPIGNC 50
>AF016438-5|AAB65893.2| 408|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 56, isoform a protein.
Length = 408
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 417 CRSRAPAWCRCSSNGETCCPMGAC 346
CR+ A + R + +GET CP+G C
Sbjct: 27 CRACAAFFRRTNVDGETFCPIGNC 50
>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
Length = 2553
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 44 PDGAGARPAVRGQGHGARRPLLQHQR 121
PD A + ++ +GH A++P+LQ R
Sbjct: 1592 PDFAAIQGSISTEGHSAQQPILQSSR 1617
>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
protein Y71G12B.11a protein.
Length = 2553
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 44 PDGAGARPAVRGQGHGARRPLLQHQR 121
PD A + ++ +GH A++P+LQ R
Sbjct: 1592 PDFAAIQGSISTEGHSAQQPILQSSR 1617
>Z92796-4|CAB63231.1| 516|Caenorhabditis elegans Hypothetical
protein H25K10.5 protein.
Length = 516
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 63 GQLYEVKVTVHDGHYFSTSELRTVDTSID 149
G Y+V V +HD + + L +V+T ID
Sbjct: 272 GMNYKVSVNIHDNYEMTRLGLESVETLID 300
>Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical
protein F54D1.3 protein.
Length = 310
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 411 SRAPAWCRCSSNGETCCP 358
S PAWC+C TC P
Sbjct: 102 SGLPAWCQCEPTKPTCPP 119
>Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical
protein F54D1.2 protein.
Length = 294
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 411 SRAPAWCRCSSNGETCCP 358
S PAWC+C TC P
Sbjct: 86 SGLPAWCQCEPTKPTCPP 103
>Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical
protein ZC373.7 protein.
Length = 297
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 411 SRAPAWCRCSSNGETCCP 358
S PAWC+C TC P
Sbjct: 88 SGLPAWCQCEPTKPTCPP 105
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 26.6 bits (56), Expect = 7.3
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = -3
Query: 173 LVRLHYRSVYGGV--DRPQL--AGAEVVAVVHRDLDLVQLAGLQPR 48
++R+H RSVYGG DR + G + R D + AG++PR
Sbjct: 2269 VIRVHRRSVYGGSIRDRDSVYGGGGRDSSFGTRAGDSISRAGVEPR 2314
>U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protein
10 protein.
Length = 294
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 411 SRAPAWCRCSSNGETCCP 358
S PAWC+C TC P
Sbjct: 86 SGLPAWCQCEPTKPTCPP 103
>U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protein
145 protein.
Length = 294
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 411 SRAPAWCRCSSNGETCCP 358
S PAWC+C TC P
Sbjct: 86 SGLPAWCQCEPTKPTCPP 103
>U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protein
144 protein.
Length = 306
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 411 SRAPAWCRCSSNGETCCP 358
S PAWC+C TC P
Sbjct: 98 SGLPAWCQCEPTKPTCPP 115
>AC087232-2|AAK09076.4| 401|Caenorhabditis elegans Hypothetical
protein Y92H12BR.6 protein.
Length = 401
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 140 GVDRPQLAGAEVVAVVHRDLDLVQLAGLQPRQDHEVV 30
G P GA+V+ L L ++AG+Q ++HE+V
Sbjct: 246 GFTLPHNLGAKVLIPQEMLLTLAKIAGIQVTREHEMV 282
>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
protein F26C11.3 protein.
Length = 1317
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 100 PSCTVTLTSYSWPGSSPVRITKSSLGDVVG 11
PS T T+Y+WP R+ S G++VG
Sbjct: 583 PSTTPGTTTYNWPTGGTTRMLPS--GEIVG 610
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 21 SPRDDFVILTGLEPGQLYEVKVTVH----DGHYFSTSELRTVDTSIDGP 155
+PR + ++ L+PG LY +KV + G + + E+RT + + P
Sbjct: 3198 TPRQN-TLIDQLQPGSLYRIKVRAYTAEGPGPWSDSLEIRTTGSELGPP 3245
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 21 SPRDDFVILTGLEPGQLYEVKVTVH----DGHYFSTSELRTVDTSIDGP 155
+PR + ++ L+PG LY +KV + G + + E+RT + + P
Sbjct: 3198 TPRQN-TLIDQLQPGSLYRIKVRAYTAEGPGPWSDSLEIRTTGSELGPP 3245
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 21 SPRDDFVILTGLEPGQLYEVKVTVH----DGHYFSTSELRTVDTSIDGP 155
+PR + ++ L+PG LY +KV + G + + E+RT + + P
Sbjct: 3198 TPRQN-TLIDQLQPGSLYRIKVRAYTAEGPGPWSDSLEIRTTGSELGPP 3245
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 21 SPRDDFVILTGLEPGQLYEVKVTVH----DGHYFSTSELRTVDTSIDGP 155
+PR + ++ L+PG LY +KV + G + + E+RT + + P
Sbjct: 3198 TPRQN-TLIDQLQPGSLYRIKVRAYTAEGPGPWSDSLEIRTTGSELGPP 3245
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 26.2 bits (55), Expect = 9.7
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = -1
Query: 193 QPAVAIFSSGFTIGPSMEVSTVRSSLVLK*WPSCTVTLTSYSWPGSSPVRITKSSL 26
QP + + G T G S T S+ V PS T +S S GSS + T+SSL
Sbjct: 739 QPIASSSTMGSTAGSSSPQPTASSTSV----PSSTGATSSGSTVGSSTMGSTQSSL 790
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,099,115
Number of Sequences: 27780
Number of extensions: 119324
Number of successful extensions: 484
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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