Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4849
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    27   1.9  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   3.3  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    26   4.4  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 6/76 (7%)
 Frame = -1

Query: 459 TGYRGSVCLSPQRSGMGIGCVRGGVSTRGCVC------GISCEWCSMRSISCNRCGSGVS 298
           TG++ S C  PQ+      C   G   R C        G  C  C         C +   
Sbjct: 44  TGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTN-G 102

Query: 297 RYRSDSFGEERSPMRC 250
           +     FG  RS M C
Sbjct: 103 QQSGGRFGGHRSNMNC 118


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 427 PKERHGHRLCKGRSKHQGLRVRHKLRVVQHAQ 332
           PK++  H+  K +  HQG + +H  R  Q+ Q
Sbjct: 404 PKDKEHHKGPKDKEHHQGPKEKHNERPEQNMQ 435


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 502 LKSAIFYLAAPAGFHVSYSGLLRHYG 579
           L +A++Y+A P G+H     LLR YG
Sbjct: 72  LTNAVYYVAPPEGYHAP-KLLLRIYG 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,785,943
Number of Sequences: 5004
Number of extensions: 30107
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)