Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4848
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0799 - 19805190-19805749,19806316-19806403                       32   0.57 
04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888     31   1.0  
02_05_0225 + 26951993-26952165,26953169-26953567,26953644-269537...    31   1.3  
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585     30   1.7  
11_04_0457 + 17916177-17916526,17917397-17917523,17917887-179182...    29   3.1  
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535...    29   5.3  

>04_03_0799 - 19805190-19805749,19806316-19806403
          Length = 215

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 506 VIIFIDI*CAKCVRDVVKLIICIKHFYCI 420
           ++I +D+ C +C   + K++ C+K  YCI
Sbjct: 6   LVITVDLKCCRCRAKITKVLDCLKEEYCI 34


>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
          Length = 213

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 506 VIIFIDI*CAKCVRDVVKLIICIKHFYCI 420
           ++I +D+ C +C   + K++ C+K  YCI
Sbjct: 12  LVITVDLKCCRCRAKITKVLDCLKAEYCI 40


>02_05_0225 +
           26951993-26952165,26953169-26953567,26953644-26953797,
           26954069-26954240,26954494-26954567,26954667-26954763,
           26954888-26955000,26955168-26955283,26955960-26956017,
           26956512-26956664,26957377-26957460,26957579-26957734,
           26958401-26958469,26959212-26959300,26959398-26959560,
           26959740-26959874,26959950-26960055,26960143-26960237,
           26960508-26960753,26961567-26961635,26961772-26961837,
           26961838-26961983,26962348-26962449,26962752-26962899,
           26964183-26964239,26964315-26964445,26964535-26964623,
           26964694-26965007,26965084-26965176,26966504-26966578,
           26966834-26966895,26967254-26967356,26967518-26967676,
           26967790-26967930,26967981-26968084,26968146-26968260,
           26969017-26969169,26969256-26969417
          Length = 1646

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
 Frame = +3

Query: 366 LNIVMKRLFVILQICEHQNTIKMLYTYYQ------FNDVTHAFRASNIYKNNNGTLPIDL 527
           +  + K LF  + + +  +TI M+ + YQ      F  + ++ R  ++ + N+G LP++ 
Sbjct: 513 MRYIRKNLFHAVYVLDPASTIDMVLSLYQDSVPIRFGIILYSSRLISVIEENDGNLPVNN 572

Query: 528 AFINLSDTPIHVIR 569
                 D  I +IR
Sbjct: 573 GSKTEEDISILIIR 586


>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
          Length = 268

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -1

Query: 506 VIIFIDI*CAKCVRDVVKLIICIKHFYCILVLTDLEYD 393
           ++I +D+ C +C   + K++ C++  YCI     +EYD
Sbjct: 6   LVILVDLQCCRCDAKIRKVLGCLEEEYCI---EKVEYD 40


>11_04_0457 +
           17916177-17916526,17917397-17917523,17917887-17918287,
           17918496-17918704,17919328-17919449,17920437-17920562,
           17920675-17920801,17920945-17921000
          Length = 505

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +3

Query: 390 FVILQICEHQNTIKMLYTYYQFNDVTHAFRASNIYKNNNGTLPIDLAF 533
           F  L +CEH N +K  Y +++ ND    F A    K   G LP D  F
Sbjct: 224 FNFLSLCEHPNILKP-YGFWEDND-NKGFIAFPRVKGTLGNLPTDELF 269


>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
            5350375-5350589,5351123-5351393,5351986-5352161,
            5352287-5352394,5352821-5352930,5354291-5354393,
            5354658-5354828,5354952-5355080,5355322-5355504,
            5355612-5355701,5355823-5355934,5356100-5356227,
            5357769-5357825,5357872-5357923,5358318-5358393,
            5358860-5358950,5359046-5359224,5359563-5359681,
            5359783-5359880
          Length = 1955

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 408  CEHQNTIKMLYTYYQFNDVTHAFRASNIYKNNNGT-LPIDLAFINLSDTPIHVIRAA 575
            C  + T+ +    Y  + V        IY N NGT   I ++  N  + PIH++  A
Sbjct: 1290 CHLKATVSVPSDAYMMDFVFSESEEGGIYDNRNGTDYHIPVSGSNAKEPPIHIVHIA 1346


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,304,361
Number of Sequences: 37544
Number of extensions: 292906
Number of successful extensions: 569
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)