Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4845
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 1.7
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 1.7
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 1.7
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 1.7
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 1.7
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 1.7
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 1.7
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 1.7
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 1.7
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 1.7
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 27 2.3
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 2.3
SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces p... 26 3.9
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 3.9
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 6.9
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 9.1
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.1
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.7
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +3
Query: 207 FARVARWHVEKMPERLPSGDVEAVFSLMDDEFTRSMWHFQFRLTYRLI----LREKELHF 374
FA++ HV ++ + P+ DVE+ S +D FT F T R L E E F
Sbjct: 35 FAKILSKHVPEIGKFDPNKDVESYISKLDQHFTEYPSLFPNEHTKRQYTLNHLEELEQQF 94
Query: 375 NIGVYNPSKELTFSCQLLLHT 437
+++ + LT+ +LL T
Sbjct: 95 AERMFSENGSLTWQ-ELLRQT 114
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.7
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +3
Query: 207 FARVARWHVEKMPERLPSGDVEAVFSLMDDEFTRSMWHFQFRLTYRLI----LREKELHF 374
FA++ HV ++ + P+ DVE+ S +D FT F T R L E E F
Sbjct: 35 FAKILSKHVPEIGKFDPNKDVESYISKLDQHFTEYPSLFPNEHTKRQYTLNHLEELEQQF 94
Query: 375 NIGVYNPSKELTFSCQLLLHT 437
+++ + LT+ +LL T
Sbjct: 95 AERMFSENGSLTWQ-ELLRQT 114
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.7
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +3
Query: 207 FARVARWHVEKMPERLPSGDVEAVFSLMDDEFTRSMWHFQFRLTYRLI----LREKELHF 374
FA++ HV ++ + P+ DVE+ S +D FT F T R L E E F
Sbjct: 35 FAKILSKHVPEIGKFDPNKDVESYISKLDQHFTEYPSLFPNEHTKRQYTLNHLEELEQQF 94
Query: 375 NIGVYNPSKELTFSCQLLLHT 437
+++ + LT+ +LL T
Sbjct: 95 AERMFSENGSLTWQ-ELLRQT 114
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.7
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +3
Query: 207 FARVARWHVEKMPERLPSGDVEAVFSLMDDEFTRSMWHFQFRLTYRLI----LREKELHF 374
FA++ HV ++ + P+ DVE+ S +D FT F T R L E E F
Sbjct: 35 FAKILSKHVPEIGKFDPNKDVESYISKLDQHFTEYPSLFPNEHTKRQYTLNHLEELEQQF 94
Query: 375 NIGVYNPSKELTFSCQLLLHT 437
+++ + LT+ +LL T
Sbjct: 95 AERMFSENGSLTWQ-ELLRQT 114
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.7
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +3
Query: 207 FARVARWHVEKMPERLPSGDVEAVFSLMDDEFTRSMWHFQFRLTYRLI----LREKELHF 374
FA++ HV ++ + P+ DVE+ S +D FT F T R L E E F
Sbjct: 35 FAKILSKHVPEIGKFDPNKDVESYISKLDQHFTEYPSLFPNEHTKRQYTLNHLEELEQQF 94
Query: 375 NIGVYNPSKELTFSCQLLLHT 437
+++ + LT+ +LL T
Sbjct: 95 AERMFSENGSLTWQ-ELLRQT 114
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.7
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +3
Query: 207 FARVARWHVEKMPERLPSGDVEAVFSLMDDEFTRSMWHFQFRLTYRLI----LREKELHF 374
FA++ HV ++ + P+ DVE+ S +D FT F T R L E E F
Sbjct: 35 FAKILSKHVPEIGKFDPNKDVESYISKLDQHFTEYPSLFPNEHTKRQYTLNHLEELEQQF 94
Query: 375 NIGVYNPSKELTFSCQLLLHT 437
+++ + LT+ +LL T
Sbjct: 95 AERMFSENGSLTWQ-ELLRQT 114
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.7
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +3
Query: 207 FARVARWHVEKMPERLPSGDVEAVFSLMDDEFTRSMWHFQFRLTYRLI----LREKELHF 374
FA++ HV ++ + P+ DVE+ S +D FT F T R L E E F
Sbjct: 35 FAKILSKHVPEIGKFDPNKDVESYISKLDQHFTEYPSLFPNEHTKRQYTLNHLEELEQQF 94
Query: 375 NIGVYNPSKELTFSCQLLLHT 437
+++ + LT+ +LL T
Sbjct: 95 AERMFSENGSLTWQ-ELLRQT 114
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.7
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +3
Query: 207 FARVARWHVEKMPERLPSGDVEAVFSLMDDEFTRSMWHFQFRLTYRLI----LREKELHF 374
FA++ HV ++ + P+ DVE+ S +D FT F T R L E E F
Sbjct: 35 FAKILSKHVPEIGKFDPNKDVESYISKLDQHFTEYPSLFPNEHTKRQYTLNHLEELEQQF 94
Query: 375 NIGVYNPSKELTFSCQLLLHT 437
+++ + LT+ +LL T
Sbjct: 95 AERMFSENGSLTWQ-ELLRQT 114
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.7
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +3
Query: 207 FARVARWHVEKMPERLPSGDVEAVFSLMDDEFTRSMWHFQFRLTYRLI----LREKELHF 374
FA++ HV ++ + P+ DVE+ S +D FT F T R L E E F
Sbjct: 35 FAKILSKHVPEIGKFDPNKDVESYISKLDQHFTEYPSLFPNEHTKRQYTLNHLEELEQQF 94
Query: 375 NIGVYNPSKELTFSCQLLLHT 437
+++ + LT+ +LL T
Sbjct: 95 AERMFSENGSLTWQ-ELLRQT 114
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.7
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +3
Query: 207 FARVARWHVEKMPERLPSGDVEAVFSLMDDEFTRSMWHFQFRLTYRLI----LREKELHF 374
FA++ HV ++ + P+ DVE+ S +D FT F T R L E E F
Sbjct: 35 FAKILSKHVPEIGKFDPNKDVESYISKLDQHFTEYPSLFPNEHTKRQYTLNHLEELEQQF 94
Query: 375 NIGVYNPSKELTFSCQLLLHT 437
+++ + LT+ +LL T
Sbjct: 95 AERMFSENGSLTWQ-ELLRQT 114
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 246 ERLPSGDVEAVFSLMDDEFTRSMWHFQFRLTYRLI 350
+RLPS D + + D F R++ H Q +Y+ I
Sbjct: 559 QRLPSSDCSKILKCLLDGFVRNVAHLQNDGSYKTI 593
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 207 FARVARWHVEKMPERLPSGDVEAVFSLMDDEFT 305
FA++ HV ++ + P+ DVE+ S +D FT
Sbjct: 35 FAKILSKHVPEIGKFDPNKDVESYISKLDQHFT 67
>SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -2
Query: 329 KLKVPHRPGELIVHKAEDSFHVTAGQSLGHLLDVPAGHP 213
++ +P PG++ + D Q L + L + AGHP
Sbjct: 83 RVSIPPLPGKIFTQRFRDDVIEERRQGLENFLRLVAGHP 121
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 26.2 bits (55), Expect = 3.9
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +3
Query: 339 YRLILREKELHFNIGVYNPSKELTFSCQLLLHTYFKVPDVRRCQITGMHGCMFIDK 506
Y L REKE F + NPSK FS + + D+R+ Q G++ F++K
Sbjct: 1324 YLLDSREKERKFLEQMLNPSKVEAFSIPVPISA-----DLRKYQQEGVNWLAFLNK 1374
>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 248 LGHLLDVPAGHPREPVLRSERPLPE 174
L +L VP G+ + V+ SERP+P+
Sbjct: 180 LQYLAHVPIGYVIQRVVFSERPIPQ 204
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 86 CSPSMTLQ*HRKDLRYMLYCC 24
C+PS HR ++ Y+L CC
Sbjct: 92 CTPSRLNTAHRPEVFYLLECC 112
>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/32 (31%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +3
Query: 408 TFSCQLLLHTYFK-VPDVRRCQITGMHGCMFI 500
+F+C+L L ++ + D + ++TG+ GC+F+
Sbjct: 265 SFTCRLPLPEPWRGIRDEKLSELTGIPGCIFV 296
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,304
Number of Sequences: 5004
Number of extensions: 50967
Number of successful extensions: 136
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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