Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4845
         (633 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC052569-1|AAH52569.1|  344|Homo sapiens SMAD6 protein protein.        31   4.5  
BC089447-1|AAH89447.1|  981|Homo sapiens proline-rich transmembr...    30   5.9  
BC040508-1|AAH40508.1|  597|Homo sapiens PRRT3 protein protein.        30   5.9  

>BC052569-1|AAH52569.1|  344|Homo sapiens SMAD6 protein protein.
          Length = 344

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 19/49 (38%), Positives = 21/49 (42%)
 Frame = -1

Query: 621 ADNVTL*CAPASCSGRCGPSTXRX*PPRGSXGTRHLPASCQ*TCSRACR 475
           AD  T+ C P   S  CGP   R  P  G+ G R  P  C   C  A R
Sbjct: 254 ADGPTVCCNPYHFSRLCGPG-ERAAPAGGAPGPRPHPLPCPSLCDTAGR 301


>BC089447-1|AAH89447.1|  981|Homo sapiens proline-rich transmembrane
           protein 3 protein.
          Length = 981

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +1

Query: 187 RSDLSTGSRGWPAGTSRRCPSDCPAVTW-----KLSSALWTMSSPGRCGTFSF 330
           R  L  G RGW A    R  +   A+       +L++ALW    PGR G FS+
Sbjct: 621 RRRLLDGPRGWDASPGPRLLAVAGALGLLASGLQLAAALWLYPGPGRVGRFSW 673


>BC040508-1|AAH40508.1|  597|Homo sapiens PRRT3 protein protein.
          Length = 597

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +1

Query: 187 RSDLSTGSRGWPAGTSRRCPSDCPAVTW-----KLSSALWTMSSPGRCGTFSF 330
           R  L  G RGW A    R  +   A+       +L++ALW    PGR G FS+
Sbjct: 237 RRRLLDGPRGWDASPGPRLLAVAGALGLLASGLQLAAALWLYPGPGRVGRFSW 289


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,840,491
Number of Sequences: 237096
Number of extensions: 2180670
Number of successful extensions: 5346
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5338
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)