Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4844
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0099 - 41076056-41076059,41076135-41076175,41076937-410770...    38   0.006
03_05_0402 - 23851755-23851802,23852012-23852022,23853055-23853427     31   0.50 
01_06_1796 - 39932487-39932633,39933150-39933201,39933370-399334...    31   0.88 
11_06_0610 - 25449085-25453284                                         30   1.5  
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126...    29   2.0  
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249...    29   3.5  
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519...    28   4.7  
07_01_0767 + 5896982-5897572,5897664-5897861                           28   4.7  

>01_07_0099 -
           41076056-41076059,41076135-41076175,41076937-41077041,
           41077476-41077552,41078773-41078944,41079099-41079194,
           41080268-41080465
          Length = 230

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 26/71 (36%), Positives = 33/71 (46%)
 Frame = -3

Query: 266 ALDGALARVDVVRAGPRGSIVVLKSLRGLPRPVQAAREPAVATTQTSAFVAELVILETME 87
           AL  AL+R D    GP   +  L++L  LPR   AA  PA A  Q  A  + L + +   
Sbjct: 11  ALALALSRADAAAPGPAAGVQWLRTLSSLPRDPAAAASPAPAPRQ-PAVGSPLGLSKIPG 69

Query: 86  YEDDQPLEGVQ 54
           YE    L G Q
Sbjct: 70  YEQTSRLSGTQ 80


>03_05_0402 - 23851755-23851802,23852012-23852022,23853055-23853427
          Length = 143

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 5   SLPKPADSGHGLCVYHPELPPRVGHLHIP 91
           +LP+PA + H +C Y  + P    H+ IP
Sbjct: 27  TLPQPAPTSHEVCPYRCQSPSAANHIRIP 55


>01_06_1796 -
           39932487-39932633,39933150-39933201,39933370-39933495,
           39933645-39933743,39934039-39934258,39934599-39934764,
           39935108-39935161,39935527-39935657,39935747-39935818,
           39936524-39936602,39936705-39936783,39936868-39936902,
           39936986-39937111
          Length = 461

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 288 PPDDELDPRDVTSYNIHPETRWNV 359
           P DDELDP D +SY+  P   W V
Sbjct: 375 PEDDELDPMDPSSYSDAPRGGWVV 398


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +3

Query: 285  APPDDELDPRDVTSYNIHPETRWNVRPTAPIYVPNDDARSIRVPTPQNIP 434
            +PP  E  P       + P    ++ P AP+ +P    +S+  P P ++P
Sbjct: 1240 SPPPPEKSPPPAAPVILSPPAVKSLPPPAPVSLPPPPVKSLPPPAPVSLP 1289


>10_06_0053 -
           10110617-10111271,10112023-10112417,10112565-10112650,
           10112973-10113021,10114164-10114290,10114372-10114526,
           10114730-10114948
          Length = 561

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 472 IATGRWKYRTIIKI*GRVRHLAFRTKWRPRLARTNG 579
           +A G++++ TIIKI         R  W PRL + NG
Sbjct: 341 LALGKYQFFTIIKIEDVFTGTLVRHPWLPRLVKENG 376


>04_04_0779 -
           28023735-28024058,28024520-28024618,28024704-28024940,
           28025227-28025334,28025427-28025486,28025813-28025888,
           28025984-28026144,28026374-28026436,28026543-28026630,
           28026872-28027612,28027695-28028239
          Length = 833

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 303 LDPRDVTSYNIHPETRWNVRPTAPIYVPNDDARSIRVPTP 422
           L P  ++  + HP    N  PT+PI VP    R+   P+P
Sbjct: 369 LPPLSISHSSFHPN---NSTPTSPISVPRSPGRTENPPSP 405


>09_03_0058 + 11950668-11950701,11951068-11951106,11951586-11951982,
            11952016-11952314,11953743-11956795
          Length = 1273

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -3

Query: 119  VAELVILETMEYE--DDQPLEGVQDGKRISHDH 27
            V +L +L+ M Y   DD+P  G+Q+ K ++H H
Sbjct: 945  VGKLTLLQNMPYYAVDDKPGRGIQELKNMNHLH 977


>07_01_0767 + 5896982-5897572,5897664-5897861
          Length = 262

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 285 APPDDELDPRDVTSY-NIHPETRWNVRPTAPIYVPNDDARSIR 410
           A PDD  D  +V ++ +IHPE      P  P+  P+ DA S R
Sbjct: 18  AEPDDVADDVEVEAFRDIHPEPSPPHLPPPPLRQPSWDAASHR 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,106,223
Number of Sequences: 37544
Number of extensions: 394157
Number of successful extensions: 1212
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)