Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4840
         (304 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    27   0.46 
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   1.4  
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    26   1.4  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    24   5.6  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    24   5.6  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    24   5.6  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    23   9.9  
SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyce...    23   9.9  

>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 27.5 bits (58), Expect = 0.46
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 160 LRITAMWIEFEYKKTLQRWFLYYLPSTPLQLTLKN 264
           +R   M IE  +KK    W   Y P TP Q+   N
Sbjct: 487 IRSYFMVIEPIFKKICYLWLFLYCPFTPFQILFSN 521


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 232 GGNKETIAAKFFYIQTLSTSL*YAKKRVRVLVRA 131
           G N  TI +K+F  +   +++ + K+ VRV++ A
Sbjct: 369 GDNSNTIISKYFIREITESNIVHFKRLVRVVLEA 402


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 92  KEINLVKIKYNFLRAYKYTHPFFCV 166
           ++I L K+ Y +L  Y  THP  C+
Sbjct: 65  RDITLKKLVYLYLINYAKTHPDLCI 89


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 137 YKYTHPFFCVSQRCG*SLNIKKLCS 211
           Y++ HPF    +    S  +KKLCS
Sbjct: 748 YRHLHPFALKGKPWMDSAKVKKLCS 772


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -2

Query: 228 VIKKPSLQSFFIFKLYPHRCDTQKK 154
           +++KP+LQ++F   L  + CD  ++
Sbjct: 348 ILRKPNLQTYFFEFLKKNFCDENQR 372


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 181 IEFEYKKTLQRWFLYYLPSTPLQLTLKNQK 270
           +E+E + TL+    YY  +T LQ  LK  +
Sbjct: 658 LEYEVQGTLEEATSYYQKNTELQQLLKQNE 687


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 80  LIKKKEINLVKIKYNFLRAYKYTHPF 157
           L KK  +NL +I+ N L     +HP+
Sbjct: 171 LRKKSRLNLQEIQKNSLHTGNTSHPY 196


>SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 225 IKKPSLQSFFIFKLYPHRCDTQKK 154
           + K  L +FF+++ Y H    QK+
Sbjct: 10  VLKEVLSAFFLYRQYAHTITQQKR 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,187,182
Number of Sequences: 5004
Number of extensions: 20088
Number of successful extensions: 49
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)