Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4840
         (304 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83216-13|CAL63987.1|  126|Caenorhabditis elegans Hypothetical p...    28   1.5  
Z81122-11|CAB61031.1|  447|Caenorhabditis elegans Hypothetical p...    26   6.0  
AF114440-1|AAD13294.1|  447|Caenorhabditis elegans delta5-fatty ...    26   6.0  
AF078796-1|AAC95143.1|  447|Caenorhabditis elegans delta 5 fatty...    26   6.0  
U46668-5|AAA93349.2|  569|Caenorhabditis elegans Hypothetical pr...    25   7.9  

>Z83216-13|CAL63987.1|  126|Caenorhabditis elegans Hypothetical
           protein C08F11.17 protein.
          Length = 126

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +2

Query: 110 KIKYNFLRAY--KYTHPFFCVSQRCG*SLNIKKLCSDGFF 223
           K KYN++ A   KY     C    CG  + ++  CS  F+
Sbjct: 72  KNKYNYVGAVSAKYNGSTICTKTPCGAVIKVQSNCSQAFY 111


>Z81122-11|CAB61031.1|  447|Caenorhabditis elegans Hypothetical
           protein T13F2.1 protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 124 LLTRVQVHAPFFLRITAMWIEFE 192
           ++ R Q H PFF++I   W + +
Sbjct: 1   MVLREQEHEPFFIKIDGKWCQID 23


>AF114440-1|AAD13294.1|  447|Caenorhabditis elegans delta5-fatty
           acid desaturase protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 124 LLTRVQVHAPFFLRITAMWIEFE 192
           ++ R Q H PFF++I   W + +
Sbjct: 1   MVLREQEHEPFFIKIDGKWCQID 23


>AF078796-1|AAC95143.1|  447|Caenorhabditis elegans delta 5 fatty
           acid desaturase protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 124 LLTRVQVHAPFFLRITAMWIEFE 192
           ++ R Q H PFF++I   W + +
Sbjct: 1   MVLREQEHEPFFIKIDGKWCQID 23


>U46668-5|AAA93349.2|  569|Caenorhabditis elegans Hypothetical
           protein F38E9.1 protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 116 KYNFLRAYKYTHPFFCVSQRCG*SL 190
           +Y+F R +   HPF  +++RCG SL
Sbjct: 155 EYDFRRFF--LHPFSSIAERCGISL 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,572,788
Number of Sequences: 27780
Number of extensions: 110981
Number of successful extensions: 213
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)