Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4830
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    27   1.2  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   2.0  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.2  

>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 146 KNYILTFFCRLSHYELREVGLTAVRV 69
           +N+  TF  + + YE+RE GL  VR+
Sbjct: 209 ENHYNTFVTKQTFYEIREAGLDHVRI 234


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 387 GGRAHSPPGIKWLLEPIDIYN 325
           GG  H P  + WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 378 AHSPPGIKWLLEPIDIYNVTAPSTLR 301
           A  PP IK    P+DI N+ A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,680,762
Number of Sequences: 5004
Number of extensions: 32005
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)