Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4830
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70208-11|CAA94144.1|  598|Caenorhabditis elegans Hypothetical p...    28   3.1  
Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical pr...    27   4.1  

>Z70208-11|CAA94144.1|  598|Caenorhabditis elegans Hypothetical
           protein F54B11.11 protein.
          Length = 598

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 24/77 (31%), Positives = 40/77 (51%)
 Frame = +3

Query: 12  ISIR*STRSQSNRLLVVVYNSDSC*SHLS*LIM**PTKKG*YVVFKRFY*IHFFTGGSRT 191
           I+ + +T SQ     V+ YN+ S   +    I+  PT K   +++K  + I  ++G   +
Sbjct: 300 IAFQGNTPSQIYMAKVINYNATSFNPNQLPQII--PTNKFTLLMYKSLFTIELYSGDEYS 357

Query: 192 SCKSARVGTTTLPISAV 242
           + K  RVG T L IS+V
Sbjct: 358 AWKQPRVGRTGL-ISSV 373


>Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical
           protein F53A2.1 protein.
          Length = 859

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 154 FIEYIFSLVVVGPLVSPHG*VPPPC 228
           F   I SL   GPLVSP G +P  C
Sbjct: 36  FSSIILSLYFCGPLVSPMGPLPARC 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,577,570
Number of Sequences: 27780
Number of extensions: 193768
Number of successful extensions: 312
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)