Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4829
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch...    30   0.31 
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar...    28   1.7  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    27   2.9  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    26   6.7  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   6.7  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    25   8.9  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   8.9  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    25   8.9  

>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
           Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -3

Query: 304 ESKPSRVPPKRIQKKTFKSVTCL*ACNNKLIIHNDLK 194
           E+  + + P+ +QK T++ V  +  C+++ IIH DLK
Sbjct: 100 ETGATSLDPRLVQKFTYQLVNGVNFCHSRRIIHRDLK 136


>SPBC2F12.11c |rep2||transcriptional activator
           Rep2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 219

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 138 AATHHEI*VVKSQNSYNVTFRSLCIMSL-LLQAYKQVTD 251
           AA+ ++  +V+SQN  NVT+ SL I  L + Q  +Q TD
Sbjct: 74  AASPNQQPLVESQNRRNVTYASLVIGKLGIAQLIRQQTD 112


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 503 NRMQRKKRQVRDTNTKMCRMKPAKNDTEI 589
           + ++RKK Q  +   K  R KP KND +I
Sbjct: 4   SELKRKKHQSGNEEVKEKRQKPLKNDKKI 32


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 147 HHEI*VVKSQNSYNVTFRSLCIMSLLLQAY 236
           H+ I  + S +S +++FR +CI    LQ Y
Sbjct: 365 HNLIDAICSMHSSSISFRQVCIAETQLQQY 394


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 553 HFCICVSYLSFFPLHPV*NHNDSKEVFTSIYIFLSII 443
           +F  CV Y+S  PLH    ++D+ E+      F ++I
Sbjct: 685 YFVFCVFYISLIPLH----NSDNSEIVLGNNYFTTLI 717


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +3

Query: 228 QAYKQVTDLNV--FFCMRLGGTLDGLDSQNSSADGAA 332
           Q Y QV   N    FC+RL   LDG  +  +  DG +
Sbjct: 448 QVYPQVNAHNHQHLFCLRLNPMLDGYSNSVAVVDGVS 484


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 394 TIIHSSRSSHLXXXXXX*IPTAAPSAELFCESKPSRVP 281
           T  HS RSSH        +PTAA ++ +   S  S  P
Sbjct: 578 TSSHSERSSHSSYHNSSHVPTAAFNSPIMRTSTKSTSP 615


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -1

Query: 750 CKIWSLVNNCKVAPSVN*YFNFTYNPKLKFTTRAFIHT-LVLKNLTDGAVLNSMYISVSF 574
           CK W+ ++       VN        PKL+  T  FI T L   NL    +L +  +   F
Sbjct: 284 CKHWNKLSRATPFAMVNSMLTLKPLPKLQLATPNFIFTALATSNLI--GILCARSLHYQF 341

Query: 573 FAGF 562
           +A F
Sbjct: 342 YAWF 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,140,796
Number of Sequences: 5004
Number of extensions: 65769
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)