Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4829
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical ...    29   4.7  
U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin fam...    28   6.3  

>AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical
           protein Y39C12A.5 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -2

Query: 590 IFLYHSLLASSYTF-LYLCLLPVVFSVASGLKSQRF*RSFHFNIYFSIYNL 441
           +F Y++   S  TF + +C+L V+FS ++    QR    F FN+ +++  +
Sbjct: 207 VFKYYTRYVSILTFFIIVCILSVIFSFSATPNVQRL-LKFIFNLSYTLLTI 256


>U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin family
           protein 18 protein.
          Length = 473

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 590 IFLYHSLLASSYTFLYLCLLPVVFSVASGLKSQRF 486
           ++LY + + S      +CLL  VF VA+  +S+ F
Sbjct: 60  VYLYSNFIVSFLVLCSVCLLIFVFDVATSQESEAF 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,426,579
Number of Sequences: 27780
Number of extensions: 371567
Number of successful extensions: 901
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)