Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4828
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...   117   1e-27
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    28   1.2  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    28   1.2  
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac...    25   8.1  

>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score =  117 bits (282), Expect = 1e-27
 Identities = 62/134 (46%), Positives = 86/134 (64%)
 Frame = +3

Query: 144 EDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPV 323
           +DPL FLR  PQFQQ+R ++QQNP +L  +LQQIGQ +PAL Q I+Q+ EAF+++L E  
Sbjct: 244 DDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQLLAEGA 303

Query: 324 NPSAAGVASDENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKN 503
              +A             P  G Q  IQ++ ++ E+I+RL  LGF  ++VIQAY AC+KN
Sbjct: 304 EGESA------------LPSGGIQ--IQITQEESESIDRLCQLGFDRNIVIQAYLACDKN 349

Query: 504 ENLAANFLLSQNFD 545
           E LAAN+L     +
Sbjct: 350 EELAANYLFEHGHE 363


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 351 DENVADIQQPQLGSQNVIQV-SAQDKEAIERLKALGFPEHMVIQAYFACEK 500
           D  ++ +  P+    +V++  SA  + A  RLK LG  +  ++     CEK
Sbjct: 442 DNTLSSVDIPRASIAHVVRATSAMSQSASARLKNLGLQQKAILCTLVVCEK 492


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 192 RAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPV 323
           R V Q++   LN ++ Q   T P  ++ I  ++E  +   N P+
Sbjct: 624 RTVAQRHKEQLNQLMNQFNSTQPHFIRCIVPNEEKKMHTFNRPL 667


>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = +3

Query: 309 LNEPVNPSAAGVASDENVADI---QQPQLGSQNVIQVS-AQDKEAIERLKALGFPEHMVI 476
           L + V P+A+ + +DE  +D+   ++   GS N      +  + +  R +  G P  + +
Sbjct: 18  LTQEVRPTASQIIADEEASDLDEYEEDLEGSGNEDDFGPSMSRSSRGRKRRKGDP--LEL 75

Query: 477 QAYFACEKNENLAANFLL 530
           Q+ F  E+NE  A NF L
Sbjct: 76  QSQFE-ERNETDAINFQL 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,495
Number of Sequences: 5004
Number of extensions: 44908
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)