Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4826
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0410 - 3166651-3166815,3166901-3167218,3167305-3167652           28   4.5  
02_02_0662 - 12736904-12737214,12737632-12737914                       28   4.5  

>03_01_0410 - 3166651-3166815,3166901-3167218,3167305-3167652
          Length = 276

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
 Frame = -3

Query: 534 GVPVETGPVLVVSRSVARVTGTAALISGSVTSIARVP*KTTEASLITA--LISALVTTIV 361
           G PVE      +  + A+ TGT   + G + + A+       A+L TA       +  ++
Sbjct: 165 GTPVERSDAAAIQAAEAKATGTDTYMPGGLAAQAQ---SAAVANLWTARDADKTKLGDVL 221

Query: 360 TSKTALITLTRITETGVAVT*TGISVTETRAAVAR 256
           ++ TA +   +  E+G A    G  +     A AR
Sbjct: 222 SNATAKLAADKEVESGDAARVAGAEMRNKPGAAAR 256


>02_02_0662 - 12736904-12737214,12737632-12737914
          Length = 197

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -3

Query: 546 SVGRGVPVETGPVLVVSRSVARVTGTAALISGSVTSIARVP 424
           S G G  VE  P + VSRS AR+ G+ + ++GSV    + P
Sbjct: 55  SSGPGADVEEEP-MAVSRSGARMHGSCSPMAGSVVPGGKEP 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,050,139
Number of Sequences: 37544
Number of extensions: 160412
Number of successful extensions: 464
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)