Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4826
(566 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 31 0.58
U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 30 1.0
AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-li... 30 1.0
Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z81493-1|CAB04039.1| 178|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z81124-2|CAB03368.1| 151|Caenorhabditis elegans Hypothetical pr... 28 5.4
DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related ... 27 9.4
DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related ... 27 9.4
AL031620-5|CAA20926.1| 277|Caenorhabditis elegans Hypothetical ... 27 9.4
AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeti... 27 9.4
AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeti... 27 9.4
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 31.1 bits (67), Expect = 0.58
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -3
Query: 429 VP*KTTEASLITALISALVTTIVTSKTALITLTRITETGVAVT*TGISVTETRA 268
+P TT+ L+T+ + TT+ + TA I T T T T G++ T TRA
Sbjct: 206 MPMPTTQP-LVTSTAPEVTTTVAQTTTAPIVTTANTTTQGVTTTAGVTTTVTRA 258
>U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical
protein F31D5.4 protein.
Length = 989
Score = 30.3 bits (65), Expect = 1.0
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Frame = +2
Query: 263 TAARVSVTEIPV*VTATPVS----VIRVKVIRAVLEVTMVVTKADIRAVIREASVVFQGT 430
T AR + T IP T T ++ V + V T+ T A+ T
Sbjct: 235 TTARTTTTMIPTTPTTTTIASTSTVTSIVTSTTVTSTTVPTTTVVTTVPTTTATSTSTST 294
Query: 431 RAMEVTDPDIRA-AVPVTRATDLDTTNTGPVSTGTPRP 541
+ T P VT +T+ ++ T P ++ TP P
Sbjct: 295 ASTTTTTPSTSTHTTTVTYSTNATSSTTSPTTSPTPEP 332
>AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-like
protein MTH-2 protein.
Length = 971
Score = 30.3 bits (65), Expect = 1.0
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Frame = +2
Query: 263 TAARVSVTEIPV*VTATPVS----VIRVKVIRAVLEVTMVVTKADIRAVIREASVVFQGT 430
T AR + T IP T T ++ V + V T+ T A+ T
Sbjct: 217 TTARTTTTMIPTTPTTTTIASTSTVTSIVTSTTVTSTTVPTTTVVTTVPTTTATSTSTST 276
Query: 431 RAMEVTDPDIRA-AVPVTRATDLDTTNTGPVSTGTPRP 541
+ T P VT +T+ ++ T P ++ TP P
Sbjct: 277 ASTTTTTPSTSTHTTTVTYSTNATSSTTSPTTSPTPEP 314
>Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical
protein F56H9.6 protein.
Length = 245
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Frame = +2
Query: 380 ADIRAVIREASVVFQGTRAME----VTDPDIRAAVPVTRATDLDTTNTGPVSTGTPRPTL 547
AD EA+ + T E T+P P T +T TT T P +T T PT
Sbjct: 30 ADPTTTTTEATTTTEITTTTEEVTTTTEPVTTTTTPTTTSTTSTTTTTTPTTTTTTTPTT 89
Query: 548 VIS 556
S
Sbjct: 90 TTS 92
>Z81493-1|CAB04039.1| 178|Caenorhabditis elegans Hypothetical
protein F01D5.1 protein.
Length = 178
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 532 GTGRNWTCIGCIQICSPGNRHCRSDIRVCNLHSPGTLKDHRSL 404
G +N C C CS ++C + C +PGT KD SL
Sbjct: 127 GWVKNGYCNKCFYKCSEREKYC---AKSCGFCTPGTCKDCNSL 166
>Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical
protein W04G5.9 protein.
Length = 405
Score = 27.9 bits (59), Expect = 5.4
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = -3
Query: 519 TGPVLVVSRSVARVTGTAALISGSVTSIARVP*KTTEASLI--TALISALVTTIVTSKTA 346
T PV+ +RS AR+T T A S P K + A I T ++ TT VT +T
Sbjct: 111 TKPVITATRSTARITTTKA----STLEPPEAPTKASTARTISTTETTTSPPTTTVTPRTT 166
Query: 345 LITLTRITET 316
+ R T
Sbjct: 167 RSSTARTVAT 176
>Z81124-2|CAB03368.1| 151|Caenorhabditis elegans Hypothetical
protein T21B4.3 protein.
Length = 151
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = -3
Query: 507 LVVSRSVARVTGTAALISGSVTSIARVP*K-TTEASLITALISALVTTIVTSKTALITLT 331
L+ S +G + + + T++ TT T +A+VT T ALITLT
Sbjct: 8 LIAILSWLTTSGNSCIATSPTTTVTTTDASVTTTPPTTTPPTTAVVTDCTTCTAALITLT 67
Query: 330 RITETGVAVT 301
+ T+ V T
Sbjct: 68 QGTDGAVDAT 77
>DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related
alternative variant b protein.
Length = 482
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 401 REASVVFQGTRAMEVTDPDIRAAV---PVTRATDLDTTNTGPVSTGTP 535
R+ V GT + + P + ++V P TRA +D + P+S TP
Sbjct: 376 RQPLRVNPGTPSTTIKKPPVASSVQRQPPTRARSVDRSGQPPISASTP 423
>DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related
alternative variant a protein.
Length = 507
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 401 REASVVFQGTRAMEVTDPDIRAAV---PVTRATDLDTTNTGPVSTGTP 535
R+ V GT + + P + ++V P TRA +D + P+S TP
Sbjct: 376 RQPLRVNPGTPSTTIKKPPVASSVQRQPPTRARSVDRSGQPPISASTP 423
>AL031620-5|CAA20926.1| 277|Caenorhabditis elegans Hypothetical
protein C18B12.5 protein.
Length = 277
Score = 27.1 bits (57), Expect = 9.4
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +1
Query: 478 YPGYRSGYNQYRSSFDRYP 534
Y GY+ G+++++ SF +YP
Sbjct: 256 YLGYKYGFSEFKLSFKKYP 274
>AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform b
protein.
Length = 482
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 401 REASVVFQGTRAMEVTDPDIRAAV---PVTRATDLDTTNTGPVSTGTP 535
R+ V GT + + P + ++V P TRA +D + P+S TP
Sbjct: 376 RQPLRVNPGTPSTTIKKPPVASSVQRQPPTRARSVDRSGQPPISASTP 423
>AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform a
protein.
Length = 507
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 401 REASVVFQGTRAMEVTDPDIRAAV---PVTRATDLDTTNTGPVSTGTP 535
R+ V GT + + P + ++V P TRA +D + P+S TP
Sbjct: 376 RQPLRVNPGTPSTTIKKPPVASSVQRQPPTRARSVDRSGQPPISASTP 423
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,392,438
Number of Sequences: 27780
Number of extensions: 135909
Number of successful extensions: 457
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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