Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4825
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    28   1.4  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    26   4.2  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    25   9.7  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    25   9.7  
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe...    25   9.7  

>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 458 LSIYLGYNRSSRYASAKYHVW*CIPELYFSYHSSIIE 568
           LSI     R    A A +H+W  +PELY   H +  E
Sbjct: 211 LSIIWSAWRKLPDAEAWHHIWVMVPELYEKSHHAFFE 247


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 223 IMVTMGP*TTTRLSPKLYCNNSIKAT*STSEMLVPNSA 336
           ++   GP TT+ LS   Y  +S+ A    S   VPNSA
Sbjct: 167 VLKNSGPATTSLLSSTTYPFDSLNAFNEPSHSHVPNSA 204


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +3

Query: 9   VRKIDSSRFSGLLNMHKKFHENRSSGFGGVW 101
           + K  +  F    N+  K HE  S+ FG  W
Sbjct: 140 INKAVNENFGSKENLLSKIHELASNSFGACW 170


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 398 SWNLFVNGNLAFVFIKHGSSL 460
           +W+  +N N+ +VF+  GSSL
Sbjct: 394 TWHENINNNVKYVFLAAGSSL 414


>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 472 EINTEAATMFYKNKRQIPIY 413
           EIN E++ +++  K  IPIY
Sbjct: 204 EINDESSVLYWAYKNNIPIY 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,964
Number of Sequences: 5004
Number of extensions: 62660
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)