Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4825
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0329 - 3599571-3600554                                           30   1.9  
10_01_0322 + 3516922-3517899                                           29   3.3  
05_06_0120 + 25748882-25749297,25749411-25749600,25749682-257498...    28   7.6  

>10_01_0329 - 3599571-3600554
          Length = 327

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 363 LMARHAVGGCAVRY*HLACGSRSFDAVITIQFRRQSCCG 247
           +MARH   G  V   HL  G+R FDAV      + +C G
Sbjct: 67  IMARHRRTGSKVALKHLPHGARDFDAVRVEAACQHACTG 105


>10_01_0322 + 3516922-3517899
          Length = 325

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 363 LMARHAVGGCAVRY*HLACGSRSFDAVITIQFRRQSCCG 247
           +MARH   G  V   HL  G+R FDAV      + +C G
Sbjct: 65  IMARHRRTGNKVALKHLPHGARDFDAVRVEAACQHACTG 103


>05_06_0120 +
           25748882-25749297,25749411-25749600,25749682-25749888,
           25750234-25750401,25751155-25751390,25751617-25751764
          Length = 454

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +2

Query: 410 FVNGNLAFVFIKHGSSLSIYLGYNRSSRYASAKYHVW*CIPELYFSYHSSII 565
           ++ G++ F+F   G++LS+Y GY+R     SA      C    Y+SY + ++
Sbjct: 254 YIEGSVDFIF---GNALSLYEGYSRGKPLLSATLAPRSC-DWPYYSYTNQMV 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,454,868
Number of Sequences: 37544
Number of extensions: 379568
Number of successful extensions: 621
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)