Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4824
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl...    27   2.4  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   3.2  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    25   9.8  

>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
           endonuclease Cce1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 258

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 267 ALYRALQRNALHSEIEHGFPVSLS-EPNKEKWRARLNYNVMFS 392
           AL+ A +RN++  +I++ F +SLS +     W + LN    FS
Sbjct: 144 ALHYAEKRNSIEQKIQYPFLLSLSPKSTYSYWASVLNTKASFS 186


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 294 HFVEVLYTAHTLNPLSFGF 238
           HF  V YTA+ L+PL FGF
Sbjct: 7   HFYNVTYTAYRLSPL-FGF 24


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +3

Query: 564 HYSWQVKSTR-SVTLPYYGLIRTR 632
           H ++ V++T  +V + YYGL+RT+
Sbjct: 566 HTNYPVEATHFAVAMAYYGLLRTK 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,265
Number of Sequences: 5004
Number of extensions: 46443
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)