Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4823
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    27   3.1  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   5.4  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    25   7.1  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    25   7.1  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   9.4  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    25   9.4  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   9.4  

>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 398 EHTVLVDREVEHRASLPPLDALPLIT--VKEITGE 300
           E  + VDR++ + A  PP++ LP ++  +K   GE
Sbjct: 352 EGQIFVDRQLHNNAIYPPINVLPSLSRLMKSAIGE 386


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +1

Query: 205 ANMIISWAGNKIDTRLWIPSELGAFRSCNFAISPVISLTVISGN-ASKGGREALCSTSLS 381
           ++ +ISWA        W     G F +C F++          GN   K   E LC T++ 
Sbjct: 425 SDSLISWASRLFTKGFWYAISFGVFSNC-FSLQLQSFFEKHLGNVVDKFFLEHLCETTIE 483

Query: 382 TNTV 393
           ++ +
Sbjct: 484 SDAM 487


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 311 ITGEIAKLQERKAPNSDGI 255
           +TG+I   QER  P S+GI
Sbjct: 502 LTGKITSYQERVGPESEGI 520


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 143 VIGIHNPGKPKNEPISYRPIIL 78
           V GIH+ G+P   PI +R + L
Sbjct: 264 VHGIHSKGRPYQPPIEFRTVRL 285


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 325 LPLKK*REKSRSYKNGKRPTLTESTTAYQFCYLPN 221
           +PLK   + + SY N K P + +S  ++   YL N
Sbjct: 19  IPLKDNPKDTSSYINKKNPFVNDSFDSHDDSYLDN 53


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 558 RLNMTLKSKTIASMPPLARPSGLSS 484
           RL+  L SK     PP   P GLSS
Sbjct: 3   RLSQLLNSKKAKQKPPSEHPIGLSS 27


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1125

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -3

Query: 305  GEIAKLQERKAPNSDGIHNRVSILLPAQ 222
            G +   +E KAP+++ +H R+S ++ +Q
Sbjct: 1024 GNLMTSEETKAPDNNDLHKRLSDVINSQ 1051


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,149
Number of Sequences: 5004
Number of extensions: 57838
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)