Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4823
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35663-15|CAA84722.2|  228|Caenorhabditis elegans Hypothetical p...    31   0.93 
Z82266-16|CAJ80812.1|  423|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z68213-10|CAJ80816.1|  423|Caenorhabditis elegans Hypothetical p...    29   3.8  
U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical p...    29   3.8  

>Z35663-15|CAA84722.2|  228|Caenorhabditis elegans Hypothetical
           protein T04A8.4 protein.
          Length = 228

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = -3

Query: 473 DDEKVEVLTDALQEQCTTRT*SVDAEHTVLVDREVEHRASLPPLD-ALPL---ITVKEIT 306
           DDEK+  +  +LQE   + T S D  + + + R  E  A +PP+    P    I    +T
Sbjct: 128 DDEKIITMLMSLQEIRESLTASGDPANCIQIRRNSEPVAFVPPVSKEAPRPRPIRSDSVT 187

Query: 305 GEIAKLQERKAPNSDGI 255
              AK +    PN+D +
Sbjct: 188 SSKAKFEAPPPPNTDSL 204


>Z82266-16|CAJ80812.1|  423|Caenorhabditis elegans Hypothetical
           protein C01F6.6c protein.
          Length = 423

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 331 HLLPLKK*REKSRSYKNGKRPTLTESTTAYQFCYLPN 221
           H + + + RE S+     +  T+T S +AYQ+ Y+P+
Sbjct: 302 HSIQVNEEREISKMTTTTRTETITNSNSAYQYKYVPS 338


>Z68213-10|CAJ80816.1|  423|Caenorhabditis elegans Hypothetical
           protein C01F6.6c protein.
          Length = 423

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 331 HLLPLKK*REKSRSYKNGKRPTLTESTTAYQFCYLPN 221
           H + + + RE S+     +  T+T S +AYQ+ Y+P+
Sbjct: 302 HSIQVNEEREISKMTTTTRTETITNSNSAYQYKYVPS 338


>U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical
           protein F55F8.9 protein.
          Length = 477

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 459 RGTDRCTTRAVHHQDLIRGRR-THRVS*QGSRAQSFPATL 343
           RG++ CT  A H + + + RR   R+S   +R  S+ +TL
Sbjct: 208 RGSNECTANATHKKIVFKNRRYGRRISRNQNRFSSYGSTL 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,075,944
Number of Sequences: 27780
Number of extensions: 324014
Number of successful extensions: 824
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)